View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_high_32 (Length: 240)
Name: NF6507_high_32
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40360237 - 40360462
Alignment:
| Q |
1 |
atcgaatatttattgtgactgcaataattgcggttgtggattgcaatttaaaacaagattttaatagaaagtt----gattacctcgtttgagatttttg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
40360237 |
atcgaatatttattgtgactgcaataattgcggttgtggattgcaatttaaaacaatattttaagagaaagttaattgattacctcgtttgagatttttg |
40360336 |
T |
|
| Q |
97 |
ttttccttgctgcaacactttgaacaacactgtcagcactacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40360337 |
ttttccttgctgcaacactttgaacaacactgtcagcactacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttc |
40360436 |
T |
|
| Q |
197 |
cttccttgtatcagcttcggtgcaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
40360437 |
cttccttgtatcagcttcggtgcaat |
40360462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University