View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_high_33 (Length: 239)
Name: NF6507_high_33
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15997833 - 15997612
Alignment:
| Q |
1 |
ctggctcatttaggccttttctttggcaattctttcataaatctatatatttgtgattctcggatcttgttttgtttattgtgaattattatcatttatt |
100 |
Q |
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| T |
15997833 |
ctggctcatttaggccttttctttggcaattctttcataaatctctatctttgtgattctcagatcttgttttgtttattgtgaattattatcatttatt |
15997734 |
T |
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| Q |
101 |
ggttaagcacctaaatcattccctcactggagtttatttataaatttgactcctaaatatgttacttttaagacaattaattgtgctctttttaagaagt |
200 |
Q |
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| T |
15997733 |
ggttaagcacctaactcattccctcactggagtttatttataaatttgactcctaaatatgttacttttgagacaattaattgtgctctttttaagaagt |
15997634 |
T |
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| Q |
201 |
atgagaaaaactagtttcagac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15997633 |
atgagaaaaactagtttcagac |
15997612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 15618404 - 15618482
Alignment:
| Q |
79 |
ttgtgaattattatcatttattggttaagcacctaaatcattccctcactggagtttatttataaatttgactcctaaa |
157 |
Q |
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||||||||||| |||| ||||||||| | |||| |||||||||||||| |||||| ||||||| ||| ||||||||| |
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| T |
15618404 |
ttgtgaattatgatcaattattggtttaataccttaatcattccctcaccagagtttctttataagttttactcctaaa |
15618482 |
T |
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