View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_high_36 (Length: 229)
Name: NF6507_high_36
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_36 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: scaffold0257 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 16934 - 17041
Alignment:
| Q |
104 |
gtgggaagtgtttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct |
203 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16934 |
gtgggaagtttttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct |
17033 |
T |
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| Q |
204 |
tattttat |
211 |
Q |
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|||||||| |
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| T |
17034 |
tattttat |
17041 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 28183391 - 28183460
Alignment:
| Q |
143 |
atataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatg |
212 |
Q |
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| T |
28183391 |
atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatg |
28183460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28482476 - 28482426
Alignment:
| Q |
133 |
ttacagtagtatataaaatatctccatag-ctttttatcatctctattgta |
182 |
Q |
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| T |
28482476 |
ttacagtagtatataaaatatctccatagtttttttatcatctctattgta |
28482426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28511288 - 28511238
Alignment:
| Q |
133 |
ttacagtagtatataaaatatctccatag-ctttttatcatctctattgta |
182 |
Q |
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| T |
28511288 |
ttacagtagtatataaaatatctccatagtttttttatcatctctattgta |
28511238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 28147198 - 28147255
Alignment:
| Q |
155 |
tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatg |
212 |
Q |
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| T |
28147198 |
tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatg |
28147255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 17746774 - 17746735
Alignment:
| Q |
171 |
atctctattgtaattacagcactttgttattcttattttat |
211 |
Q |
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| T |
17746774 |
atctctattgtacttacag-actttgttattcttattttat |
17746735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 19048094 - 19048055
Alignment:
| Q |
171 |
atctctattgtaattacagcactttgttattcttattttat |
211 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||| |
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| T |
19048094 |
atctctattgtacttacag-actttgttattcttattttat |
19048055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 28053163 - 28053211
Alignment:
| Q |
160 |
agctttttatcatctctattgtaattacagcactttgttattcttattt |
208 |
Q |
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|||||||||| |||||||||||| |||||| || |||||||||| |||| |
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| T |
28053163 |
agctttttattatctctattgtacttacaggacattgttattctcattt |
28053211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 28063588 - 28063636
Alignment:
| Q |
160 |
agctttttatcatctctattgtaattacagcactttgttattcttattt |
208 |
Q |
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|||||||||| |||||||||||| |||||| || |||||||||| |||| |
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| T |
28063588 |
agctttttattatctctattgtacttacaggacattgttattctcattt |
28063636 |
T |
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