View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_high_5 (Length: 603)
Name: NF6507_high_5
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Original strand, 29103990 - 29104562
Alignment:
| Q |
19 |
catttcaggagtattgtttgatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagc |
118 |
Q |
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| T |
29103990 |
catttcaggagtattgtttgatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagc |
29104089 |
T |
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| Q |
119 |
acgttgctgtaatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttca |
218 |
Q |
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| T |
29104090 |
acgttgctgtaatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttca |
29104189 |
T |
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| Q |
219 |
atattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaa |
318 |
Q |
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| T |
29104190 |
atattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctgttgaattaaa |
29104289 |
T |
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| Q |
319 |
cgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgca |
418 |
Q |
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| T |
29104290 |
cgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgca |
29104389 |
T |
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| Q |
419 |
acgacttcaggaaatctgaaaagcaaaatagctccattcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaaga |
518 |
Q |
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| T |
29104390 |
acgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttct------------ttgatggaattcgaagcgaaga |
29104477 |
T |
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| Q |
519 |
ttcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgatgatgtccatctc |
603 |
Q |
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| T |
29104478 |
ttcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgttgattttcatctc |
29104562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 38 - 587
Target Start/End: Original strand, 29089748 - 29090285
Alignment:
| Q |
38 |
gatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagcacgttgctgtaatctgcaa |
137 |
Q |
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| T |
29089748 |
gatgattctggactgtataagtaagattctggcaatggggaattcaacgacggaggaatgtcgaagaatatttcagaaagcacgttgctgtaatctgtaa |
29089847 |
T |
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| Q |
138 |
gagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattc |
237 |
Q |
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| T |
29089848 |
gcttggtaagatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcgccagcgatttggaagagtccttcaggattgcggactcgaattc |
29089947 |
T |
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| Q |
238 |
caaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatc |
337 |
Q |
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| T |
29089948 |
tgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgagatttaacaccagaggttgaattgaaagagaaaatcgattcaacc |
29090047 |
T |
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| Q |
338 |
tccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctga |
437 |
Q |
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| T |
29090048 |
tccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgta |
29090147 |
T |
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| Q |
438 |
aaagcaaaatagctccat-tcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcc |
536 |
Q |
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| T |
29090148 |
agagaagagtagctccatctctt-gaaatttcaccaaaacaagcttct------------ctgatggaattcgaagcgaaaattcgttcgcagaggtttc |
29090234 |
T |
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| Q |
537 |
tctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaac |
587 |
Q |
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| T |
29090235 |
tctctccagaaaagagtgttctcactgagatcttaactgcctctaaccaac |
29090285 |
T |
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