View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_high_8 (Length: 555)

Name: NF6507_high_8
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_high_8
NF6507_high_8
[»] chr7 (16 HSPs)
chr7 (1-310)||(4803187-4803496)
chr7 (1-262)||(47416146-47416407)
chr7 (410-549)||(14682710-14682852)
chr7 (410-509)||(30474884-30474982)
chr7 (412-509)||(17238358-17238454)
chr7 (449-515)||(8684952-8685018)
chr7 (305-379)||(17236919-17236993)
chr7 (444-512)||(17278636-17278704)
chr7 (444-512)||(30765904-30765972)
chr7 (444-503)||(18298067-18298126)
chr7 (264-310)||(47416837-47416883)
chr7 (467-509)||(14682134-14682176)
chr7 (467-509)||(16956167-16956209)
chr7 (449-509)||(25443240-25443301)
chr7 (449-498)||(17236299-17236350)
chr7 (467-509)||(30474518-30474560)
[»] chr6 (7 HSPs)
chr6 (305-549)||(902366-902612)
chr6 (444-549)||(12261244-12261349)
chr6 (449-498)||(901659-901708)
chr6 (444-549)||(27129043-27129147)
chr6 (444-512)||(16146315-16146383)
chr6 (449-496)||(20746382-20746429)
chr6 (460-496)||(20746437-20746473)
[»] chr4 (14 HSPs)
chr4 (305-549)||(13630290-13630529)
chr4 (414-509)||(44183542-44183636)
chr4 (410-509)||(45044613-45044711)
chr4 (412-509)||(50282652-50282748)
chr4 (305-379)||(44183420-44183494)
chr4 (305-379)||(9091805-9091879)
chr4 (412-549)||(9091624-9091758)
chr4 (305-379)||(50282534-50282608)
chr4 (449-512)||(9087095-9087158)
chr4 (467-510)||(45045065-45045108)
chr4 (461-503)||(26281017-26281059)
chr4 (449-498)||(26280323-26280372)
chr4 (453-498)||(44182798-44182845)
chr4 (449-498)||(50281915-50281966)
[»] chr3 (8 HSPs)
chr3 (410-509)||(54834173-54834272)
chr3 (412-509)||(52255247-52255343)
chr3 (305-379)||(52255129-52255203)
chr3 (444-549)||(34817530-34817634)
chr3 (459-509)||(33389411-33389461)
chr3 (444-549)||(32305024-32305129)
chr3 (444-549)||(42540954-42541059)
chr3 (450-498)||(52254514-52254564)
[»] chr5 (6 HSPs)
chr5 (410-509)||(38385111-38385209)
chr5 (444-512)||(6794535-6794603)
chr5 (444-512)||(23082776-23082844)
chr5 (467-509)||(38385577-38385619)
chr5 (449-509)||(13824397-13824458)
chr5 (449-509)||(24041980-24042041)
[»] chr1 (14 HSPs)
chr1 (416-509)||(24509185-24509277)
chr1 (413-498)||(52751290-52751375)
chr1 (410-509)||(50124321-50124416)
chr1 (305-379)||(24509068-24509142)
chr1 (434-498)||(29021826-29021890)
chr1 (449-509)||(52750392-52750452)
chr1 (449-509)||(31697356-31697416)
chr1 (444-510)||(47112331-47112397)
chr1 (306-360)||(52751084-52751137)
chr1 (449-512)||(36142350-36142413)
chr1 (449-498)||(968164-968213)
chr1 (449-498)||(968215-968264)
chr1 (444-495)||(968917-968968)
chr1 (439-498)||(24508445-24508506)
[»] chr2 (8 HSPs)
chr2 (449-509)||(10708372-10708432)
chr2 (449-509)||(12602345-12602406)
chr2 (444-512)||(20685867-20685935)
chr2 (444-512)||(40468848-40468916)
chr2 (449-504)||(3093384-3093438)
chr2 (444-549)||(19298323-19298428)
chr2 (444-496)||(8029762-8029814)
chr2 (444-549)||(28189646-28189751)
[»] scaffold0202 (1 HSPs)
scaffold0202 (444-512)||(21961-22029)
[»] chr8 (2 HSPs)
chr8 (444-512)||(13462342-13462410)
chr8 (475-515)||(9319119-9319159)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 4803496 - 4803187
Alignment:
Q  1 taatttttgcatgtgtatgatgatatccaaggagccaagattgaatgtcgtgtcagttcacttttgaactattatttgattggtttgcattttgggattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803496 taatttttgcatgtgtatgatgatatccaaggagccaagattgaatgtcgtgtcagttcacttttgaactattatttgattggtttgcattttgggattc 4803397  T
Q  101 ttaaggagattattttatttcatgttggaagaaattaaaaaattgttctaactctgcttcattttatagtgtcaagctggaaacagtcctttgctatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4803396 ttaaggagattattttatttcatgttggaagaaattaaaaaattgttctaactctgcttcattttatagtgtcaagctggaaatagtcctttgctatgat 4803297  T
Q  201 atcagtgatgatcttgaaattgaaataagttgatttttaaatttggctataggctatagctactatccagtagttaagtttgttattagaactggcattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803296 atcagtgatgatcttgaaattgaaataagttgatttttaaatttggctataggctatagctactatccagtagttaagtttgttattagaactggcattt 4803197  T
Q  301 ctagttacga 310  Q
    ||||||||||    
T  4803196 ctagttacga 4803187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 47416146 - 47416407
Alignment:
Q  1 taatttttgcatgtgtatgatgatatccaaggagccaagattgaatgtcgtgtcagttcacttttgaactattatttgattggtttgcattttgggattc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47416146 taatttttgcatgtgtatgatgatatccaagaagccaagattgaatgtcgtgtcagttcacttttgaactattatttgattggtttgcattttgggattc 47416245  T
Q  101 ttaaggagattattttatttcatgttggaagaaattaaaaaattgttctaactctgcttcattttatagtgtcaagctggaaacagtcctttgctatgat 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  47416246 ttaagcagattattttatttcatgttggaagaaattaaaaaattgttctaactctgcttcattttattgtgtcaagctggaaacagtcctttgctatgaa 47416345  T
Q  201 atcagtgatgatcttgaaattgaaataagttgatttttaaatttggctataggctatagcta 262  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47416346 atcagtaatgatcttgaaattgaaataagttgatttttaaatttggctataggttatagcta 47416407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 410 - 549
Target Start/End: Original strand, 14682710 - 14682852
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagata---a 506  Q
    |||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |    
T  14682710 ttgttggttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagataatga 14682809  T
Q  507 tgaaaaagannnnnnnncctgggttggtgtgttgttgatgatg 549  Q
    |||||||||         |||||||||||||||||||||||||    
T  14682810 tgaaaaagaattttttttctgggttggtgtgttgttgatgatg 14682852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 509
Target Start/End: Original strand, 30474884 - 30474982
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30474884 ttgttgtttggtaaattaaagtgttttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatgatga 30474982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 412 - 509
Target Start/End: Original strand, 17238358 - 17238454
Alignment:
Q  412 gttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  17238358 gttgtttggtaaattaaagtgatttttttta-tgaacaaattgattgttgattgagttatgaaattgattatgtttatagatttgctgaagatgatga 17238454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 515
Target Start/End: Complemental strand, 8685018 - 8684952
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaaga 515  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||    
T  8685018 aaattggttgttgattgagttataaaattgattatgtttataggtttgatgaagatcatgaaaaaga 8684952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 17236919 - 17236993
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| ||||||||||| |||||||||| ||||||||| || |||||||||||||| ||||||||||| |||||||    
T  17236919 ttacaattggatgagttgttataaggtaaaggtattagtttattgatatctttagtgaagcatagcagttgttgt 17236993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 17278704 - 17278636
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  17278704 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 17278636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 30765972 - 30765904
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  30765972 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 30765904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 18298067 - 18298126
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaaga 503  Q
    |||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  18298067 tgaaaaaattggttattgattgagatatgaaattgtttatgtttatagatttgatgaaga 18298126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 47416837 - 47416883
Alignment:
Q  264 tatccagtagttaagtttgttattagaactggcatttctagttacga 310  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  47416837 tatccagtagttgagttggttattagaactggcatttctagttacga 47416883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 14682176 - 14682134
Alignment:
Q  467 gttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  14682176 gttataaaattgattatgtttatagatttgatgaagataatga 14682134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 16956209 - 16956167
Alignment:
Q  467 gttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  16956209 gttataaaattgattatgtttatagatttgatgaagataatga 16956167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 25443301 - 25443240
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgataaagataatga 509  Q
    ||||||||| | ||||||||||||||||| ||| ||||||||||||||||| ||||| ||||    
T  25443301 aaattggttatagattgagttatgaaattaatttatgtttatagatttgatgaagattatga 25443240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 17236350 - 17236299
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 498  Q
    ||||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  17236350 aaattggttattgattgagttatgaaatggattatatgtttatagatttgat 17236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 30474560 - 30474518
Alignment:
Q  467 gttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  30474560 gttatgaaattgagtatgtttatagatttgatgaagatgatga 30474518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 305 - 549
Target Start/End: Original strand, 902366 - 902612
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgtggttttggatttagatttnnnnnnn 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||           
T  902366 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcagttgttgtggttttggatttggattttaaaaaa 902465  T
Q  405 nnnnn-ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaaga 503  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902466 aaaaaattgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaaga 902565  T
Q  504 taatgaaaaaga-nnnnnnnncctgggttggtgtgttgttgatgatg 549  Q
    ||||||||||||         ||||||||||||||||||||||||||    
T  902566 taatgaaaaagatttttttttcctgggttggtgtgttgttgatgatg 902612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 12261244 - 12261349
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| ||||||| ||         |||||||||||||||||||    
T  12261244 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaaggaaaaaaaaatctgggttggtgtgttgttg 12261343  T
Q  544 atgatg 549  Q
    ||||||    
T  12261344 atgatg 12261349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 901708 - 901659
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  901708 aaattggttattgattgagttatgaaatagattatgtttatagatttgat 901659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 549
Target Start/End: Complemental strand, 27129147 - 27129043
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| ||| ||||||         |||||||||||||||||||    
T  27129147 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatg-aaaagaaaaaaaaatctgggttggtgtgttgttg 27129049  T
Q  544 atgatg 549  Q
    ||||||    
T  27129048 atgatg 27129043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 16146383 - 16146315
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||||| ||||| | ||||| |||||||    
T  16146383 tgaaaaaattggttattgattaagttatgaaattgattttgtttatatatttgttgaagatgatgaaaa 16146315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 20746382 - 20746429
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 496  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20746382 aaattggttattgattaagttatgaaattgattatgtttatatatttg 20746429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 20746437 - 20746473
Alignment:
Q  460 tgattgagttatgaaattgattatgtttatagatttg 496  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746437 tgattaagttatgaaattgattatgtttatatatttg 20746473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 305 - 549
Target Start/End: Complemental strand, 13630529 - 13630290
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgtggttttggatttagatttnnnnnnn 404  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||           
T  13630529 ttacgattggatgagtagttataaggtgaaggtattagttcattgatatctttagagaagcatagcagt-gttgtggttttggatttggatttaaaaaaa 13630431  T
Q  405 nnnnnttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagat 504  Q
          | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13630430 aaa---tattgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagat 13630335  T
Q  505 aatgaaaaagannnnnnnncctgggttggtgtgttgttgatgatg 549  Q
     ||||||||||         ||||||| |||||||||||||||||    
T  13630334 gatgaaaaagattattttttctgggttagtgtgttgttgatgatg 13630290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 414 - 509
Target Start/End: Original strand, 44183542 - 44183636
Alignment:
Q  414 tgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  44183542 tgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 44183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 509
Target Start/End: Complemental strand, 45044711 - 45044613
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  45044711 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttattgattgagttatgaaattgattatgtttatatatttgatgaagatgatga 45044613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 412 - 509
Target Start/End: Original strand, 50282652 - 50282748
Alignment:
Q  412 gttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  50282652 gttgtttggtaaattaaagtgacttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 50282748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 44183420 - 44183494
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  44183420 ttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttagagaagcatagcaattgttgt 44183494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 9091879 - 9091805
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  9091879 ttacaattggatgagtagttataaggtgaaagtattagtttattgatatctttagagaagcatagcaattgttgt 9091805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 549
Target Start/End: Complemental strand, 9091758 - 9091624
Alignment:
Q  412 gttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaa 511  Q
    |||||||||||||||||| |||||||  ||  ||||||||||| ||||| |||||||||||||||||| || ||||||||||||||| ||||| ||| ||    
T  9091758 gttgtttggtaaattaaagtgatttt--ttcatgaacaaattgcttgttaattgagttatgaaattgaatacgtttatagatttgatgaagatgatg-aa 9091662  T
Q  512 aagannnnnnnncctgggttggtgtgttgttgatgatg 549  Q
    || |        ||||||||||||||||||||||||||    
T  9091661 aatattttttttcctgggttggtgtgttgttgatgatg 9091624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 50282534 - 50282608
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| ||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||    
T  50282534 ttacaatttgatgagtagttataaggtgaaggtattagtttattgatatttttagagaagcatagcagttgttgt 50282608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 9087095 - 9087158
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  9087095 aaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 9087158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 45045065 - 45045108
Alignment:
Q  467 gttatgaaattgattatgtttatagatttgataaagataatgaa 510  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  45045065 gttatgaaattgattatgtttatagatttgatgaagatgatgaa 45045108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 26281017 - 26281059
Alignment:
Q  461 gattgagttatgaaattgattatgtttatagatttgataaaga 503  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  26281017 gattgagatatgaaattgtttatgtttatagatttgatgaaga 26281059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 26280372 - 26280323
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    ||||||||| |||||| || ||||||||| |||||||||||| |||||||    
T  26280372 aaattggttattgattaagatatgaaattcattatgtttataaatttgat 26280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 44182845 - 44182798
Alignment:
Q  453 tggttgttgattgagttatgaaattgat--tatgtttatagatttgat 498  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  44182845 tggttattgattgagttatgaaatggattatatgtttatagatttgat 44182798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 50281966 - 50281915
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 498  Q
    |||||| || |||||||||||||||||| |||  ||||||||||||||||||    
T  50281966 aaattgattattgattgagttatgaaatggattatatgtttatagatttgat 50281915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 509
Target Start/End: Complemental strand, 54834272 - 54834173
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54834272 ttgttgtttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagataatga 54834173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 412 - 509
Target Start/End: Original strand, 52255247 - 52255343
Alignment:
Q  412 gttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||    
T  52255247 gttgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatatgatgaagatgatga 52255343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 52255129 - 52255203
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  52255129 ttacaattggaagagtagttataaggtgaaggtattagtttattgatatctttagagaagcatagcagttgttgt 52255203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 444 - 549
Target Start/End: Complemental strand, 34817634 - 34817530
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||| ||||||| ||         |||||||||||||||||||    
T  34817634 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttgttgaagatgatgaaaaggaaaaaaaat-ctgggttggtgtgttgttg 34817536  T
Q  544 atgatg 549  Q
    ||||||    
T  34817535 atgatg 34817530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 33389461 - 33389411
Alignment:
Q  459 ttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  33389461 ttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 33389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 32305024 - 32305129
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| ||||||| ||          ||||||||||||||||||    
T  32305024 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaaggaaaaaaaaatttgggttggtgtgttgttg 32305123  T
Q  544 atgatg 549  Q
    ||||||    
T  32305124 atgatg 32305129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 42540954 - 42541059
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| ||||||| ||          ||||||||||||||||||    
T  42540954 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaaggaaaaaaaaatatgggttggtgtgttgttg 42541053  T
Q  544 atgatg 549  Q
    ||||||    
T  42541054 atgatg 42541059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 52254564 - 52254514
Alignment:
Q  450 aattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 498  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  52254564 aattggttattgattgagttatgaaatggattatatgtttatagatttgat 52254514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 509
Target Start/End: Complemental strand, 38385209 - 38385111
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  38385209 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 38385111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 6794535 - 6794603
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  6794535 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 6794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 23082844 - 23082776
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||  | ||||| |||||||    
T  23082844 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttattgaagatgatgaaaa 23082776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 509
Target Start/End: Original strand, 38385577 - 38385619
Alignment:
Q  467 gttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  38385577 gttatgaaattgattatgtttatagatttgatgaagatgatga 38385619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 13824397 - 13824458
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgataaagataatga 509  Q
    ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  13824397 aaattggttattgatggagatatgaaattgattaatgtttatagatttgatgaagatgatga 13824458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 24042041 - 24041980
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgataaagataatga 509  Q
    ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  24042041 aaattggttattgatggagatatgaaattgattaatgtttatagatttgatgaagatgatga 24041980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 416 - 509
Target Start/End: Original strand, 24509185 - 24509277
Alignment:
Q  416 tttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  24509185 tttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 24509277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 52751290 - 52751375
Alignment:
Q  413 ttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52751290 ttgtttggtaaattaaagtgcttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgat 52751375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 509
Target Start/End: Original strand, 50124321 - 50124416
Alignment:
Q  410 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  50124321 ttgttgtttggtaaattaaagtgattttttttagtgaacaaattg----ttgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 50124416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 24509068 - 24509142
Alignment:
Q  305 ttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttagagaagcatagcaattgttgt 379  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  24509068 ttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttagagaagcatagcagttgttgt 24509142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 29021890 - 29021826
Alignment:
Q  434 ttttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29021890 ttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgat 29021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 52750452 - 52750392
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52750452 aaattggttattgattgagttatgaaattgattatgtttatagatttgatgaagatgatga 52750392  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 31697416 - 31697356
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  31697416 aaattggttattgattgagatatgaaattgattatgtttatagatttgatgaagatgatga 31697356  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 510
Target Start/End: Complemental strand, 47112397 - 47112331
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaa 510  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||    
T  47112397 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaa 47112331  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 52751084 - 52751137
Alignment:
Q  306 tacgattggatgagtagttataaggtgaaggtattaattcattgatatctttaga 360  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  52751084 tacgattggatgagtagt-ataaggtgaggatattaattcattgatatctttaga 52751137  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 36142413 - 36142350
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||||| || |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  36142413 aaattgattattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 36142350  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 968213 - 968164
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  968213 aaattggttattgattaagatatgaaattgattatgtttataaatttgat 968164  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 968264 - 968215
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 498  Q
    ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  968264 aaattggttattgattaagatatgaaattgattatgtttataaatttgat 968215  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 968917 - 968968
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 495  Q
    |||| ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  968917 tgaaaaaattggtgattgattgagatatgaaattgtttatgtttatagattt 968968  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 24508506 - 24508445
Alignment:
Q  439 tttagtgaacaaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 498  Q
    |||| |||| ||||||||| ||| |||||||||||||| |||  ||||||||||||||||||    
T  24508506 tttaatgaaaaaattggttattggttgagttatgaaatagattatatgtttatagatttgat 24508445  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 10708432 - 10708372
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 509  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  10708432 aaattggttattgattgagttatgaaattgattatgtttatagatttgatgaagattatga 10708372  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 12602345 - 12602406
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgataaagataatga 509  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  12602345 aaattggttattgattgagatatgaaattgattaatgtttatagatttgatgaagataatga 12602406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 20685935 - 20685867
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  20685935 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 20685867  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 40468848 - 40468916
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  40468848 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 40468916  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 504
Target Start/End: Complemental strand, 3093438 - 3093384
Alignment:
Q  449 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagat 504  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||    
T  3093438 aaattggttattgattgagttatgaaatt-attatgtttatagatttgatgaagat 3093384  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 19298323 - 19298428
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| ||||||||| |||||| | |||||||||||||| |||||||| ||||| | ||||| ||||||| ||         |||||||||||||||||||    
T  19298323 tgaaaaaattggttattgattaaattatgaaattgattttgtttatatatttgttgaagatgatgaaaaggaaaaaaaaatctgggttggtgtgttgttg 19298422  T
Q  544 atgatg 549  Q
    ||||||    
T  19298423 atgatg 19298428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 8029762 - 8029814
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 496  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  8029762 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 8029814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 549
Target Start/End: Complemental strand, 28189751 - 28189646
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaaagannnnnnnncctgggttggtgtgttgttg 543  Q
    |||| |||||| || |||||| ||||||||||||||||||||||||| ||||  | ||||| |||||||  |         |||||||||||||||||||    
T  28189751 tgaaaaaattgattattgattaagttatgaaattgattatgtttatatatttattgaagatgatgaaaagaaaaaaaaaatctgggttggtgtgttgttg 28189652  T
Q  544 atgatg 549  Q
    ||||||    
T  28189651 atgatg 28189646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 21961 - 22029
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  21961 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttgttgaagatgatgaaaa 22029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 13462410 - 13462342
Alignment:
Q  444 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatgaaaa 512  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  13462410 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatgaaaa 13462342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 9319119 - 9319159
Alignment:
Q  475 attgattatgtttatagatttgataaagataatgaaaaaga 515  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  9319119 attgattatgtttatagatttgatgaagatgatgaaaaaga 9319159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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