View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_1 (Length: 911)
Name: NF6507_low_1
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 445 - 677
Target Start/End: Original strand, 43558348 - 43558580
Alignment:
| Q |
445 |
ctcatatatcaccaaataagtctccaattatgtgtaacaaaatggcagcaatcgattcaccctttgaagtcaatattagccgttatatttgtaacaacaa |
544 |
Q |
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| T |
43558348 |
ctcatatatcaccaaataagtctccaattatgtgtaacaaaatggcagcaatcgattcaccctttgaagtcaatattagccgttatatttgtaacaacaa |
43558447 |
T |
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| Q |
545 |
caactcaatttgtaagtgaacgtttttaattagcaattaaagattccatctgcataacgtatatatacatgcacaatatgagatcatatatacaatcaaa |
644 |
Q |
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| T |
43558448 |
caactcaatttgtaagtgaacgtttttaattagcaattaaagattccatctgcataacgtacatatacatacacaatatgagatcatatatacaatcaaa |
43558547 |
T |
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| Q |
645 |
tattcaagtgtcattttattttataaataaatt |
677 |
Q |
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| T |
43558548 |
tattcaagtgtcattttattttataaataaatt |
43558580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 675 - 911
Target Start/End: Original strand, 43558640 - 43558876
Alignment:
| Q |
675 |
atttaatttaattttccaccagggtccctttcagctcctcactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactga |
774 |
Q |
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| T |
43558640 |
atttaatttaattttccaccagggtccctttcagctcctgactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactga |
43558739 |
T |
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| Q |
775 |
aaaataaccgttggaaactctatagacgatagtcatacaaatcgggtatagtaaaagctttatagaacctaatggccaaacatatgctatataaattacc |
874 |
Q |
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| T |
43558740 |
aaaataaccgttggaaactctatagacgatagtcatacaaattgggtatagtaaaagctttatagaacctaatggccaaacatatgctatataaattatc |
43558839 |
T |
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| Q |
875 |
atcacccgttcctcatttttcatcacatcaaataatc |
911 |
Q |
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| T |
43558840 |
atcacccgttcctcatttttcatcacatcaaataatc |
43558876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 43557003 - 43557170
Alignment:
| Q |
96 |
tattggttttgaaacaagagccgaatctaccaaattttaagtcttctttctatgagcatgtacgcctaccaattttatagtccctaatctat-atagtag |
194 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43557003 |
tattagttttgaaacaagagccgaatctaccaaattttaagtcttctttctatgagcatgtacgcctaccaattttatagtccctaatctataatagtag |
43557102 |
T |
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| Q |
195 |
taaatcattaaaattaaattcatatgt-----tttaattattatcaggaacattcatcataaatacat |
257 |
Q |
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| T |
43557103 |
taaatcattaaaattaaattcatatgtattcctgtagttgttatcaggaacattcatcataaatacat |
43557170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 43556786 - 43556866
Alignment:
| Q |
17 |
agaaaaagtggtgaagaaatctatatttatcaacagttcgatcggattttagtttattttttaaaattcatatacaacata |
97 |
Q |
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| T |
43556786 |
agaaaaagtggtgaataaatctatatttatcaacggttcgatcggattttagtttattttttaaaattcatatacaacata |
43556866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 360 - 453
Target Start/End: Original strand, 43557488 - 43557580
Alignment:
| Q |
360 |
ttgcaccttagaagcctgaactgctaaaagctggagaagaccacaaattcatgtccacgctcnnnnnnnnatcttttataagctactcatatat |
453 |
Q |
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| T |
43557488 |
ttgcaccttagaagcatgaactgctaaaagttggagaataccgcaaattcatatccacgctc-tttattgatcttttataagctactcatatat |
43557580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 43557161 - 43557207
Alignment:
| Q |
296 |
ataaacacatcatacgtggctaggcatctaagaaatcaaaccaacta |
342 |
Q |
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| T |
43557161 |
ataaatacatcatacgtggctaggcatctaagaaatcaaaccaacta |
43557207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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