View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_14 (Length: 439)
Name: NF6507_low_14
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 30359591 - 30359161
Alignment:
| Q |
1 |
atgagttgggttgggttggctcagtttcggtcaagaatcattagttcagattagctcaaaaaagtgtacttttttgt-gaaacgcaatcaacccaatgaa |
99 |
Q |
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| T |
30359591 |
atgagttgggttgggttggctcagtttcggtcaagaatcattagttcagattggctcaaaaaattgtactttttttttgatacgcaatcaacccaatgaa |
30359492 |
T |
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| Q |
100 |
agtaatgaacaagttggtttgattcggaccatgtcatgacacacatatatataatttaaaattaaaaaacaatgacactctatttaatagaaattcatac |
199 |
Q |
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| T |
30359491 |
agtaatgaacaaattggtttgattcggatcatgtcatgacacacatatatataatttaaaattaaaaaacaatgacactctatttaatagaa-ttcatac |
30359393 |
T |
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| Q |
200 |
atttgaactaaattacataatttaaaatcacttttaactaaattgaaacacttgtagatattcacatgtgtttttcaacggattgagtttgtaggtttga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
30359392 |
atttgaactaaattacataatttaaaatcacttttaactaaattgaaacactagtagatattctcatgtgtttttcaaatgattaagtttgtaggtttga |
30359293 |
T |
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| Q |
300 |
aatcataagttgttatccaaaccaaatcattttaggtttgacggaatggtttgtactttataaaagagttggacaaaagactaaagaaagagaatttgac |
399 |
Q |
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|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |
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| T |
30359292 |
aatcataagttgttatccgaaccaaatcacttta--------ggaatggtttgtactttataaaagagttggaaaaaagattaaagaaagaggacttgac |
30359201 |
T |
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| Q |
400 |
cnnnnnnntgtcatcttgctgtccaatccttttaaaaagt |
439 |
Q |
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| T |
30359200 |
caaaaaaatgtcatctttctgtccaatccttttaaaaagt |
30359161 |
T |
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