View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_15 (Length: 430)
Name: NF6507_low_15
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 43243102 - 43242688
Alignment:
| Q |
7 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaattgtaattgtgtgattgttgttaagttct |
106 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
43243102 |
atttgaaatggatattgaagttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcgaaattgtgtgattgttgttgagttct |
43243003 |
T |
|
| Q |
107 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattatggaaaaatacttgtggttggtgttgttagattgaaaactgttgttgtttttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| ||| |
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| T |
43243002 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattatggaaaaatacttgtggttggtgttattagattgaaaattgttgctgttcttg |
43242903 |
T |
|
| Q |
207 |
agggagnnnnnnnntggttgaaacaacatcagattattggttatgtgttttgttttgaagtttgtatataannnnnnnnngattgatatagatgaattaa |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
43242902 |
agggag--aaaaaatggttgaaacaacatcagattattggttatgcgttttgttttgaagtttgtatataatttttttttgatagatatagaggaattaa |
43242805 |
T |
|
| Q |
307 |
ttgtgggttgagctttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttct-agttttttggatatttatgagtt |
405 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||| |||||||||||| |
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| T |
43242804 |
ttgtgggttgagatttgtttgatttggaataaagagatgaagatatgagaatatgtatcgttgaatttgtttttctaatttttttgggtatttatgagtt |
43242705 |
T |
|
| Q |
406 |
tgagttgaagatgatga |
422 |
Q |
| |
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||||||||||||||||| |
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| T |
43242704 |
tgagttgaagatgatga |
43242688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 221 - 422
Target Start/End: Complemental strand, 44891135 - 44890936
Alignment:
| Q |
221 |
tggttgaaacaacatcagattattggttatgtgttttgttttgaagtttgtatataannnnnnnnngattgatatagatgaattaattgtgggttgagct |
320 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||| ||||||||||||||||||| | |
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| T |
44891135 |
tggttgaaacaacatcagattattggttatg-gttttgttttgaagtttatatatagtttttttt--atagatatagaggaattaattgtgggttgagat |
44891039 |
T |
|
| Q |
321 |
ttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagtttttt-ggatatttatgagtttgagttgaagatga |
419 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
44891038 |
ttgtttgatttagaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttggggtttttatgagtttgagttgaagatga |
44890939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 35076910 - 35076832
Alignment:
| Q |
300 |
gaattaattgtgggttgagctttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgttt |
378 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||| |||||| || |||||||| |||| |||||||| |||||| |
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| T |
35076910 |
gaattaattgtgggttgagatttgtttattttggaatatagagatcaatatttgagagcatgtgttgttgaaattgttt |
35076832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 35780417 - 35780208
Alignment:
| Q |
7 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaattgtaattgtgtgattgttgttaagttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||| |
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| T |
35780417 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcgaaaatgtgtgattgttgttgagttct |
35780318 |
T |
|
| Q |
107 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattatgg----aaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35780317 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
35780218 |
T |
|
| Q |
203 |
tttgagggag |
212 |
Q |
| |
|
||||||||| |
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|
| T |
35780217 |
cttgagggag |
35780208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 20439870 - 20440079
Alignment:
| Q |
7 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaattgtaattgtgtgattgttgttaagttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
20439870 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaaatgtgtgattgttgttgagttct |
20439969 |
T |
|
| Q |
107 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattatgg----aaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20439970 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
20440069 |
T |
|
| Q |
203 |
tttgagggag |
212 |
Q |
| |
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||||||||| |
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| T |
20440070 |
cttgagggag |
20440079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 20445475 - 20445684
Alignment:
| Q |
7 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaattgtaattgtgtgattgttgttaagttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
20445475 |
atttgaaatggatattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaaatgtgtgattgttgttgagttct |
20445574 |
T |
|
| Q |
107 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattatgg----aaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20445575 |
tgaaggtttgtatcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgtt |
20445674 |
T |
|
| Q |
203 |
tttgagggag |
212 |
Q |
| |
|
||||||||| |
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|
| T |
20445675 |
cttgagggag |
20445684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 18009757 - 18009873
Alignment:
| Q |
305 |
aattgtgggttgagctttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttggatatttatgagt |
404 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
18009757 |
aattgtgggttgagattggtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttgggtgtttatgag- |
18009855 |
T |
|
| Q |
405 |
ttgagttgaagatgatga |
422 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
18009856 |
ttgagttgaagatgatga |
18009873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 32234380 - 32234261
Alignment:
| Q |
301 |
aattaattgtgggttgagctttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttggatatttat |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| | || || |
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| T |
32234380 |
aattaattgtgggttgagatttgtttgatttggaataaagagatgaagatttaagaatatttattgttgaatgtgtttttctgattttttgggtgttcat |
32234281 |
T |
|
| Q |
401 |
gagtttgagttgaagatgat |
420 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
32234280 |
gtgtttgagttgaagatgat |
32234261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 32234438 - 32234401
Alignment:
| Q |
240 |
ttattggttatgtgttttgttttgaagtttgtatataa |
277 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
32234438 |
ttattgattatgagttttgttttgaagtttgtatataa |
32234401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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