View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_low_17 (Length: 392)
Name: NF6507_low_17
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_17 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 9242278 - 9242645
Alignment:
| Q |
7 |
tccaagaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9242278 |
tccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgttccct |
9242377 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
9242378 |
tagccgcagtcatggatacaatactttgatttttcgaacacatcttggccaaaccaaaatctgtaatttggggaatgaaattgtcatctaacaagacatt |
9242477 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9242478 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccattggctatacctagagcaattttttgcaacttatcc |
9242577 |
T |
|
| Q |
307 |
catccaaggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9242578 |
catccaaggaaatcatctttgttgtttggggaagaaatgaatttctgcaacgaaccatttgggaaaaa |
9242645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 9364766 - 9364406
Alignment:
| Q |
7 |
tccaagaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9364766 |
tccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttccct |
9364667 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9364666 |
tagctgcagtcatggatacgatactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacatt |
9364567 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9364566 |
atgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcc |
9364467 |
T |
|
| Q |
307 |
catccaaggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttg |
367 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
9364466 |
catccaaggaaatcatctttgctgttcgcgggagaaatgaatttctgcaacgaaccatttg |
9364406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 9337907 - 9337547
Alignment:
| Q |
7 |
tccaagaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9337907 |
tccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttccct |
9337808 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9337807 |
tagctgcagtcatggatacgacactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacatt |
9337708 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9337707 |
atgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcc |
9337608 |
T |
|
| Q |
307 |
catccaaggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttg |
367 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
9337607 |
catccaaggaaatcatctttgctgttcgcgggagaaatgaatttctgcaacgaaccatttg |
9337547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 25 - 371
Target Start/End: Complemental strand, 9300445 - 9300099
Alignment:
| Q |
25 |
taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggata |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |||||| || ||||| ||||| |||| |
|
|
| T |
9300445 |
taactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctttggccgcggtcatagata |
9300346 |
T |
|
| Q |
125 |
caatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaa |
224 |
Q |
| |
|
| |||||||||||||||| || ||||| |||||||| || ||||||||||| || | ||||||||||| | ||| || |||| ||||||||||||||| |
|
|
| T |
9300345 |
tagtactttgatttttcgagcacatcttagccaaaccgaagtctgtaatttttggggttaaattgtcatcgatcaagacgttatgaggattgatgtcaaa |
9300246 |
T |
|
| Q |
225 |
gtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaaatcatct |
324 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
9300245 |
gtgaagaattctttgatcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatct |
9300146 |
T |
|
| Q |
325 |
ttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaa |
371 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9300145 |
ttgttgctaggaggagaaatgaatttctgcaacgaaccacttgggaa |
9300099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 9466483 - 9466838
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| |||||||| || || ||||||||||||||||| |||||||||||||||| ||||| || || || ||| |
|
|
| T |
9466483 |
cataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgttcctttggctgcggtc |
9466582 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| || || ||||| |||||||||| || ||||| |||||||| || ||||||||||||||| ||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
9466583 |
atagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtctgtaattttgggagtgaaattctcatctaacaagacattatgaggattga |
9466682 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||| | | ||||||||||| || |
|
|
| T |
9466683 |
tgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaatttgttgcagcgtgtcccatccaagaaa |
9466782 |
T |
|
| Q |
318 |
atcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaa |
373 |
Q |
| |
|
| |||||||||||||||| ||||||| ||||||||||| |||||| |||| |||| |
|
|
| T |
9466783 |
agcatctttgttgtttggtggagaaagaaatttctgcaaagaaccacttggaaaaa |
9466838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 46 - 371
Target Start/End: Original strand, 9257286 - 9257611
Alignment:
| Q |
46 |
taagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatactttgatttttcgaac |
145 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |||||| | || |||||||| |||| | ||||||||||||| || | |
|
|
| T |
9257286 |
taagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcagtcatagatatagtactttgattttttgagc |
9257385 |
T |
|
| Q |
146 |
atatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaattctttgatcaca |
245 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||| || | ||||||||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9257386 |
acatcttagccaaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaattctttgatcaca |
9257485 |
T |
|
| Q |
246 |
accttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaaatcatctttgttgtttgggggagaaatg |
345 |
Q |
| |
|
|| |||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |||| | || ||||||||| |
|
|
| T |
9257486 |
actttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtcccatccaaggaaactatcttcgttgctaggaggagaaatg |
9257585 |
T |
|
| Q |
346 |
aatttctgcaacgaaccatttgggaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9257586 |
aatttctgcaacgaaccatttgggaa |
9257611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 8927309 - 8926953
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| ||||||| | || |||||| |
|
|
| T |
8927309 |
cataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcccctggctgcagtc |
8927210 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| |||||| | || |||||||| || || | ||| || ||||| || || | ||||| ||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
8927209 |
atcgatacagtgctatgatttttagagcacagcttcgctaaaccgaagtccgatatttttggaatgaaattgtcatctaacaagacattgtggggattga |
8927110 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || ||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
8927109 |
tatcaaagtgaagaattctatgatcacaaccttggtgaagatactcaatcccattggcaatgcctagagcaatttgttgcaataagtcccaaccaaggaa |
8927010 |
T |
|
| Q |
318 |
atcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
| |||| ||||||| || | ||||||||| || |||||||||||||| |||||||| |
|
|
| T |
8927009 |
aacatccttgttgtcgggtgaagaaatgaagttttgcaacgaaccattcgggaaaaa |
8926953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 28 - 374
Target Start/End: Complemental strand, 8962652 - 8962306
Alignment:
| Q |
28 |
ctgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaa |
127 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
8962652 |
ctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaa |
8962553 |
T |
|
| Q |
128 |
tactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtg |
227 |
Q |
| |
|
|| |||||||||| || || | |||||| |||||||| |||| ||||| ||| | ||||||||||||||||| | ||| | |||||||| ||||| || |
|
|
| T |
8962552 |
tagtttgatttttggagcacaacttggctaaaccaaagtctgatatttttggagtaaaattgtcatctaacaagatattgtgcggattgatatcaaaatg |
8962453 |
T |
|
| Q |
228 |
tagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaaatcatctttg |
327 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||| || || ||||||||||| | |||||| ||||| ||||||||| |||| ||| |
|
|
| T |
8962452 |
aagaattctttgatcacagccctggtgaagatactcaattccattggcaatgcctagagcaatctgttgcaataagtcccaaccaaggaaaacatccttg |
8962353 |
T |
|
| Q |
328 |
ttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
|||| || | ||||||||| || |||||||||||||| |||||||| |
|
|
| T |
8962352 |
ttgtcaggtgaagaaatgaaattttgcaacgaaccattagggaaaaa |
8962306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 8939735 - 8939379
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||| | || || ||| |
|
|
| T |
8939735 |
cataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtc |
8939636 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| ||||| ||||||||||||| || || | ||| || ||||| || |||| ||||| |||| ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
8939635 |
attgatactgtactttgatttttggagcacagcttagctaaaccgaagtctgatatttttggaacgaaattgtcatctaataatacattatgtggattga |
8939536 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
| || ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| || || || |||||||||| |||||| ||||| |||||||| |
|
|
| T |
8939535 |
tatcgaagtgaagaattctatgatcacagccttggtgaagatactcaatcccattggcaatgccaagagcaatttgttgcaataagtcccaaccaaggaa |
8939436 |
T |
|
| Q |
318 |
atcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
| |||| ||||||| || | ||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
8939435 |
aacatccttgttgtcaggtgaagaaatgaaattttgcaatgaaccatttgggaaaaa |
8939379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 9125135 - 9125344
Alignment:
| Q |
25 |
taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggata |
124 |
Q |
| |
|
||||| || ||||| |||||| ||| |||||||||||||||| || ||||||||||||||||| || || | ||||| |||||||||||||||||| |
|
|
| T |
9125135 |
taactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatggata |
9125234 |
T |
|
| Q |
125 |
caatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaa |
224 |
Q |
| |
|
||| ||| ||| || ||||||| ||||| | ||||| |||| |||||| ||| |||| ||||||||| ||||||||| | ||| ||||||||||| |
|
|
| T |
9125235 |
caacactaacattctttgaacataatttggcgagtccaaagtctgaaatttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtcaaa |
9125334 |
T |
|
| Q |
225 |
gtgtagaatt |
234 |
Q |
| |
|
||| |||||| |
|
|
| T |
9125335 |
gtgaagaatt |
9125344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 9236157 - 9236446
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| || || ||||| ||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || | ||||| | || |||||| |
|
|
| T |
9236157 |
cataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgcagtc |
9236256 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| || || | ||||| ||||||| ||| | || || | ||||| || || ||||||||| | ||||| ||||||| || ||||| | ||||||| |
|
|
| T |
9236257 |
atagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgtggattga |
9236356 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatccc |
307 |
Q |
| |
|
| |||||||| || ||||| ||||||||||| || ||||||||||| || |||| | ||| ||||||||| ||||||||| |||| |
|
|
| T |
9236357 |
tatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaattcgttgcaacttttccc |
9236446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 329
Target Start/End: Complemental strand, 9378060 - 9377765
Alignment:
| Q |
34 |
atatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatacttt |
133 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| || |||||||||||||| |||||||| | |||||| |||| || || || || || |||||| |
|
|
| T |
9378060 |
atatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagctgcggttatagacaccgtacttt |
9377961 |
T |
|
| Q |
134 |
gatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaat |
233 |
Q |
| |
|
||||||| | ||| | || || | ||||| || |||||||| ||| | ||||| ||||||| || ||||| | |||||||| |||||||| || || |
|
|
| T |
9377960 |
gatttttgggacacagtttagcaagtccaaagtcagtaattttaggactcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtat |
9377861 |
T |
|
| Q |
234 |
tctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaaatcatctttgtt |
329 |
Q |
| |
|
||| ||||||||||| || ||||||||||| || | || | ||| |||||||| ||||||||| ||||| ||||| ||| |||| ||||| |
|
|
| T |
9377860 |
tctatgatcacaaccaatatgaagatactcaatccctctagcaacaccaagagcaatgcgttgcaacttttcccaaccaagaaaaacatcattgtt |
9377765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 8861554 - 8861708
Alignment:
| Q |
22 |
ccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatgg |
121 |
Q |
| |
|
||||||||||| ||||| |||||| ||| ||||| ||||||||||| || | ||||||||| |||||||| || | ||||||||||| || ||||||| |
|
|
| T |
8861554 |
ccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagcagctgtcatgg |
8861653 |
T |
|
| Q |
122 |
atacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaatttt |
176 |
Q |
| |
|
| |||| || |||| || ||||||| ||||| | ||||||||| | |||||| |
|
|
| T |
8861654 |
acacaacgctaagattcttggaacataatttggcgagaccaaaatccgaaatttt |
8861708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 9069667 - 9069869
Alignment:
| Q |
25 |
taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggata |
124 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||| ||| | ||||| |||||||| || || | |||||| |||| || |||||||| | |
|
|
| T |
9069667 |
taactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggtgccatatatcccaaggttcccctagcagctgtcatggaca |
9069766 |
T |
|
| Q |
125 |
caatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaa |
224 |
Q |
| |
|
| ||||| |||| || | ||||| ||||| | ||||| || | |||||| ||| |||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
9069767 |
ctatactaagattcttggcacataatttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtcaaa |
9069866 |
T |
|
| Q |
225 |
gtg |
227 |
Q |
| |
|
||| |
|
|
| T |
9069867 |
gtg |
9069869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 9420547 - 9420728
Alignment:
| Q |
130 |
ctttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgta |
229 |
Q |
| |
|
||||||||||| || || | || |||||||||||||| |||||||| |||| || ||||||||||| || || |||| ||||| || || ||||| | |
|
|
| T |
9420547 |
ctttgatttttagagcacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaataacacgttatagggattaatatcgaagtgaa |
9420646 |
T |
|
| Q |
230 |
gaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatcc |
311 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||| || || ||||| || |||||||||| ||| | ||| |||||||| |
|
|
| T |
9420647 |
gaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc |
9420728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 9437630 - 9437811
Alignment:
| Q |
130 |
ctttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgta |
229 |
Q |
| |
|
||||||||||| ||||| | || |||||||||||||| |||||||| |||| || ||||||||||| | || |||| ||||| || || ||||| | |
|
|
| T |
9437630 |
ctttgatttttagaacacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaatagcacgttatggggattaatatcgaagtgaa |
9437729 |
T |
|
| Q |
230 |
gaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatcc |
311 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||| || || ||||| || |||||||||| ||| | ||| |||||||| |
|
|
| T |
9437730 |
gaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc |
9437811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 10992894 - 10992814
Alignment:
| Q |
237 |
ttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
||||||||||||||| || |||||||||| || || |||||||||| |||||||| |||||||| | ||| |||||||| |
|
|
| T |
10992894 |
ttgatcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactttttccaaccaaggaa |
10992814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 9106347 - 9106430
Alignment:
| Q |
151 |
ttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaatt |
234 |
Q |
| |
|
||||| ||||||||||||| || ||| || |||| ||||||||| ||||||||| | ||| |||||||||||||| |||||| |
|
|
| T |
9106347 |
ttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
9106430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 368
Target Start/End: Complemental strand, 9495314 - 9495286
Alignment:
| Q |
340 |
gaaatgaatttctgcaacgaaccatttgg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9495314 |
gaaatgaatttctgcaacgaaccatttgg |
9495286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 10930686 - 10930610
Alignment:
| Q |
241 |
tcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
||||||||||| || |||||||||| || || |||||||||| |||||||| |||||||| | ||| |||||||| |
|
|
| T |
10930686 |
tcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactttttccaaccaaggaa |
10930610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 11026350 - 11026270
Alignment:
| Q |
237 |
ttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
||||||||||||||| || ||||| ||||| || || ||||| |||| |||||||| |||||||| | ||| |||||||| |
|
|
| T |
11026350 |
ttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactttttccagccaaggaa |
11026270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 11041053 - 11040973
Alignment:
| Q |
237 |
ttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
||||||||||||||| || ||||| ||||| || || ||||| |||| |||||||| |||||||| | ||| |||||||| |
|
|
| T |
11041053 |
ttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactttttccagccaaggaa |
11040973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 1975 - 1608
Alignment:
| Q |
7 |
tccaagaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1975 |
tccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttccct |
1876 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| | ||| |
|
|
| T |
1875 |
tagctgtagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatatt |
1776 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| |
|
|
| T |
1775 |
atgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaatttatcc |
1676 |
T |
|
| Q |
307 |
catccaaggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
1675 |
catccaaggaaatcatctttgttgttcaggtgagatatgaatttctgtaacgaaccatttggaaaaaa |
1608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 15910131 - 15910498
Alignment:
| Q |
7 |
tccaagaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15910131 |
tccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttccct |
15910230 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| | ||| |
|
|
| T |
15910231 |
tagctacagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatatt |
15910330 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| |
|
|
| T |
15910331 |
atgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaatttatcc |
15910430 |
T |
|
| Q |
307 |
catccaaggaaatcatctttgttgtttgggggagaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
15910431 |
catccaaggaaatcatctttgttgttcgggtgagatatgaatttttgtaacgaaccatttggaaaaaa |
15910498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 9171861 - 9171551
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||| | || |||||| |
|
|
| T |
9171861 |
cataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtc |
9171762 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| |||| | ||||||||||||| || || | ||| |||||||| || ||||||||||| || ||||||||||||||| || || |||| |||||| | |
|
|
| T |
9171761 |
attgatatagtactttgattttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaa |
9171662 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcccatccaaggaa |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
9171661 |
tgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgtcccatctaaggaa |
9171562 |
T |
|
| Q |
318 |
atcatctttgt |
328 |
Q |
| |
|
| |||||||| |
|
|
| T |
9171561 |
actatctttgt |
9171551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 374
Target Start/End: Complemental strand, 9171533 - 9171499
Alignment:
| Q |
340 |
gaaatgaatttctgcaacgaaccatttgggaaaaa |
374 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9171533 |
gaaatgaatttctgcaaagaaccatttgggaaaaa |
9171499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 27696369 - 27696113
Alignment:
| Q |
40 |
gacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatactttgatttt |
139 |
Q |
| |
|
|||||||| || ||| | ||||| ||||||||||| || || || || |||||||| | |||||| |||||| ||||| || ||||||||| | || |
|
|
| T |
27696369 |
gacttataggatacaatgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctt |
27696270 |
T |
|
| Q |
140 |
tcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaattctttg |
239 |
Q |
| |
|
| ||||| | || |||||||||||||| | ||||||||| |||||||||| |||| ||| || |||| ||| ||||| ||||| || ||||||| || |
|
|
| T |
27696269 |
tggaacaaagttttgccaaaccaaaatcagaaattttgggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgttt |
27696170 |
T |
|
| Q |
240 |
atcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttg |
296 |
Q |
| |
|
|||||||||||| || ||||||||||| || || |||||||| |||| ||| ||||| |
|
|
| T |
27696169 |
atcacaaccttgatgaagatactcaattcccttcgctataccaagagaaatgttttg |
27696113 |
T |
|
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