View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_18 (Length: 389)

Name: NF6507_low_18
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_18
NF6507_low_18
[»] chr3 (3 HSPs)
chr3 (1-371)||(21086541-21086916)
chr3 (6-103)||(18192990-18193087)
chr3 (5-84)||(19277736-19277814)
[»] chr5 (3 HSPs)
chr5 (5-172)||(7958696-7958863)
chr5 (9-122)||(11992938-11993051)
chr5 (75-224)||(23913696-23913838)
[»] chr4 (1 HSPs)
chr4 (5-204)||(27432549-27432750)
[»] chr7 (5 HSPs)
chr7 (33-139)||(7629484-7629590)
chr7 (1-157)||(11671374-11671530)
chr7 (17-87)||(8270988-8271058)
chr7 (98-224)||(18100506-18100625)
chr7 (5-94)||(49004009-49004098)
[»] chr2 (2 HSPs)
chr2 (5-170)||(10422800-10422965)
chr2 (67-144)||(20486270-20486347)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 21086541 - 21086916
Alignment:
Q  1 acatatatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaa 100  Q
    |||||||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21086541 acatatatatcgaaaattatttccttttcattggtcaacaacaccgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaa 21086640  T
Q  101 ttgtggatgtatgattctatttagtgctaaaaacaattgatattatttttt-ctccatagcgagagaaaaacttcacttaacttaattgccaaaaagaga 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21086641 ttgtggatgtttgattctatttagtgctaaaaacaattgatattatttttttctccatagctagagaaaaacttcacttaacttaattgccaaaaagaga 21086740  T
Q  200 aaacatatatacaag----atatatcaaatcaaaataactttgtgcttagtgcttagtgcaggacttggaattcataatggctgggcagcaaatgagcag 295  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21086741 aaacatatatacaagcaagatatatcaaatcaaaataactttgtgcttagtgcttagtgcaggacttggaattcataatggctgggcagcaaatgagcag 21086840  T
Q  296 tgtttttgattcttgctctataccttcatcttccgtggcgtctttcaaaaaatatgacgtttttctcagctttcat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21086841 tgtttttgattcttgctctataccttcatcttccgtggcgtctttcaaaaaatatgacgtttttctcagctttcat 21086916  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 18193087 - 18192990
Alignment:
Q  6 tatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattg 103  Q
    ||||||||||||||||||||||  |||| ||||| ||| ||||||||||| |||| ||||| |||||  ||||||||||||| |||||| ||||||||    
T  18193087 tatatcgaaaattatttccttttcattgatcaaccacaatgtccatccaccaaaattcttctcatttccatattctcttttgatctcttctgtaattg 18192990  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 19277736 - 19277814
Alignment:
Q  5 atatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctctt 84  Q
    |||||||||| ||||||||||||  |||| ||||| ||| ||||||||||  |||| | ||| |||||||||||||||||    
T  19277736 atatatcgaagattatttccttttcattgatcaaccacaatgtccatccatcaaaa-ttttctcatttttatattctctt 19277814  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 7958696 - 7958863
Alignment:
Q  5 atatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattgt 104  Q
    ||||||| || ||||||| ||||  |||| |||||  || ||||||||||| |||| ||||| ||||| ||||||||||  || |||||| ||||||||     
T  7958696 atatatcaaagattattttcttttcattgatcaactgcaatgtccatccactaaaattcttctcatttctatattctctcctgatctcttatgtaattgc 7958795  T
Q  105 ggatgtatgattctatttagtgctaaaaacaattgatattattttttctccatagcgagagaaaaact 172  Q
     ||||| ||||||||||| | | ||  ||||| || | ||||| ||||| ||| |||||| |||||||    
T  7958796 cgatgtttgattctatttggcggtatgaacaaatgttgttattgtttcttcattgcgagaaaaaaact 7958863  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 11992938 - 11993051
Alignment:
Q  9 atcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattgtggat 108  Q
    |||||| |||||||||||| ||||| |||   ||| | ||||||||| || | ||||| |||||  ||||| ||||||| |||||||| ||||||   ||    
T  11992938 atcgaagattatttcctttttattgatcataaacaatctccatccaccaacattcttctcatttcaatattatcttttgatctcttttataattgccaat 11993037  T
Q  109 gtatgattctattt 122  Q
    || |||||||||||    
T  11993038 gtttgattctattt 11993051  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 23913838 - 23913696
Alignment:
Q  75 atattctcttttgctctcttttgtaattgtggatgtatgattctatttagtgctaaaaacaattgatattattttttctccatagcgagagaaaaacttc 174  Q
    ||||| ||||||  |||||||| |||||||  |||| |||||||||||  || ||||||||||||   ||||| ||||||||| | ||||  ||||| ||    
T  23913838 atattatcttttagtctcttttttaattgtcaatgtttgattctatttgctggtaaaaacaattg---ttattgtttctccattgtgagaataaaacctc 23913742  T
Q  175 acttaacttaattgccaaaaagagaaaacatatatacaagatatatcaaa 224  Q
    | | ||||| |||||| ||||||||||||  | | |||||||||||||||    
T  23913741 attcaactt-attgcc-aaaagagaaaac--aaaaacaagatatatcaaa 23913696  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 27432750 - 27432549
Alignment:
Q  5 atatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattgt 104  Q
    |||||||||| |||||||| |||  |||| | ||| ||| |||||||| || ||||   ||| ||||| |||||||||||||  |||||| ||||||||     
T  27432750 atatatcgaatattatttctttttcattgattaaccacaatgtccatcaacaaaaaaaattctcatttctatattctcttttaatctcttctgtaattgc 27432651  T
Q  105 ggatgtatgattctatttagt-gctaaaaacaattgatattattttttctccatagcgagag--aaaaacttcacttaacttaattgccaaaaagagaaa 201  Q
     ||||| |||||||||||||| | ||||| ||| || | ||| | ||| |  || |||||||  |||||||||| ||||||||||||  |||||||||||    
T  27432650 cgatgtttgattctatttagtagttaaaaccaaatgttgttactgtttgtttattgcgagagaaaaaaacttcatttaacttaattg-taaaaagagaaa 27432552  T
Q  202 aca 204  Q
    |||    
T  27432551 aca 27432549  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 7629484 - 7629590
Alignment:
Q  33 ggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattgtggatgtatgattctatttagtgctaaaa 132  Q
    ||||||| ||| ||||||||||  ||||| |||||||||| ||||||||||||| || || | ||| ||||| | ||| ||||||||||| ||| |||||    
T  7629484 ggtcaaccacaatgtccatccatcaaaacccttcccatttctatattctcttttactatcctctgttattgtcggtgtttgattctatttggtggtaaaa 7629583  T
Q  133 acaattg 139  Q
     ||||||    
T  7629584 tcaattg 7629590  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11671374 - 11671530
Alignment:
Q  1 acatatatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaa 100  Q
    ||||||||||| || |||||||| |||  |||| ||||| ||| || |||||||| |||| ||||| | ||| |||||||||||||| |||||| | |||    
T  11671374 acatatatatcaaagattatttctttttcattgatcaaccacaatgcccatccaccaaaaatcttctcttttctatattctcttttgatctcttatataa 11671473  T
Q  101 ttgtggatgtatgattctatttagtgctaaaaacaattgatattattttttctccat 157  Q
    |||  || || | ||||||||| ||   |||||||| |  ||||||| |||||||||    
T  11671474 ttgccgacgttttattctatttggtagaaaaaacaaatattattattgtttctccat 11671530  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 8271058 - 8270988
Alignment:
Q  17 ttatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttg 87  Q
    |||||||||||  |||| ||||| ||| ||||||||||| |||| ||||| ||| | ||||||||||||||    
T  8271058 ttatttccttttcattgatcaaccacaatgtccatccaccaaaattcttctcatctctatattctcttttg 8270988  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 18100506 - 18100625
Alignment:
Q  98 taattgtggatgtatgattctatttagtgctaaaaacaattgatattattttttctccatagcgagagaaaaacttcacttaacttaattgccaaaaaga 197  Q
    ||||||| ||||| |||||||||||  || ||||||||||||   ||||| ||||||||| |||||| || ||| ||| || | || |||||| ||||||    
T  18100506 taattgtcgatgtttgattctatttgttggtaaaaacaattg---ttattgtttctccattgcgagaaaacaacctca-ttcaatttattgcc-aaaaga 18100600  T
Q  198 gaaaacatatatacaagatatatcaaa 224  Q
    ||||||  ||| |||||||||||||||    
T  18100601 gaaaac--ataaacaagatatatcaaa 18100625  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 49004009 - 49004098
Alignment:
Q  5 atatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctctt 94  Q
    ||||||| || ||||| || ||| ||||| ||||| ||| ||||| ||||| |||| ||||| ||||| | |||||||||||| ||||||    
T  49004009 atatatcaaagattatatcgtttttattgatcaaccacaatgtccttccaccaaaattcttctcatttatttattctcttttgatctctt 49004098  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 10422965 - 10422800
Alignment:
Q  5 atatatcgaaaattatttcctttgtattggtcaacgacactgtccatccacgaaaactcttcccatttttatattctcttttgctctcttttgtaattgt 104  Q
    ||||||| || ||||||| ||||  |||| |||||  || ||||||||||| |||| ||||| ||||| ||| ||||||  || |||||| ||||||||     
T  10422965 atatatcaaatattattttcttttcattgatcaactgcaatgtccatccaccaaaattcttctcatttctatgttctctcctgatctcttatgtaattgc 10422866  T
Q  105 ggatgtatgattctatttagtgctaaaaacaattgatattattttttctccatagcgagagaaaaa 170  Q
     ||||| ||||||||||| ||| ||  ||||| || | ||||| ||||| ||| |||||| |||||    
T  10422865 cgatgtttgattctatttggtggtatgaacaaatgttgttattgtttcttcattgcgagaaaaaaa 10422800  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 20486270 - 20486347
Alignment:
Q  67 ccatttttatattctcttttgctctcttttgtaattgtggatgtatgattctatttagtgctaaaaacaattgatatt 144  Q
    ||||||||||||||||||||  |||||| | ||||||  ||||| ||||| |||||  || |||||||||||| ||||    
T  20486270 ccatttttatattctcttttagtctcttctttaattggcgatgtttgattttattttttggtaaaaacaattgctatt 20486347  T

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