View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6507_low_19 (Length: 368)
Name: NF6507_low_19
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 43192475 - 43192132
Alignment:
| Q |
21 |
accgtccccgtccactacctacaattaaggagtttaagggtgcaattgatattactgaaagaacggaggataatccatgatgggactttgatgtaagtgg |
120 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||| ||||||||| | |
|
|
| T |
43192475 |
accgtcctcgcccactacctacaattaaggagtttaagggtgcagttgatattactgaaagaa---aggatgatccatcatgggacttcgatgtaagtag |
43192379 |
T |
|
| Q |
121 |
tgttgtctacttatatgcttttcttagattta--gatgtcttaaagtgtttccttcagttttgcatattacatttcttcattgttttctagacattatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
43192378 |
tgttgtctacttatatgcttttcttagatttattgatgtcttaaagtgcttccttcagtgttccatattacatttctgcattgttttctagacactgtat |
43192279 |
T |
|
| Q |
219 |
ttctactgtgtaagatatgattttaacaatta-ttaagtttaaattttgggaagattatttgctagg---tgaatgnnnnnnnccccaagtttgttgtac |
314 |
Q |
| |
|
|| || || ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||| |
|
|
| T |
43192278 |
ttgtattgcgtaagatattattttcacaattatttaagtttaaattttgggaagattatttgctaggtgatgaatg-ttttttccccaactttgctgtac |
43192180 |
T |
|
| Q |
315 |
catagtttttgtaaggtctctcaatatgttcatttgtcttcatctcag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
43192179 |
catagtttttgtaaggtctctcaatatgttcatttctctacatttcag |
43192132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 43195344 - 43195597
Alignment:
| Q |
21 |
accgtccccgtccactacctacaattaaggagtttaagggtgcaattgatattactgaaagaacggaggataatccatgatgggactttgatgtaagtgg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
43195344 |
accgtccccgtccactacctataattaaggagtttaaaggtgcaattgacattactgaaagaa---agggtgatccatcatgggactttgatgtaagtgg |
43195440 |
T |
|
| Q |
121 |
tgttgtctacttatatgcttttcttagatttagatgtcttaaagtgtttccttcagttttgcatattacatttcttcattgttttctagacattatattt |
220 |
Q |
| |
|
|||||||| || || ||||||||||||||| |||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
43195441 |
tgttgtcttctgatctgcttttcttagatt------tcttgaagtgtttctttcacttttgtttattacatttcttcattgttttctagacattatcatt |
43195534 |
T |
|
| Q |
221 |
ctactgtgtaagatatgattttaacaattattaagtttaaattttgggaagattatttgctagg |
284 |
Q |
| |
|
|||| ||||||||||||| | ||||| | ||| ||| |||| ||||| ||||||||||||| |
|
|
| T |
43195535 |
gtactctgtaagatatgataatcacaatagtcaag-ttagatttcgggaaaattatttgctagg |
43195597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 53673014 - 53673069
Alignment:
| Q |
184 |
tattacatttcttcattgttttctagacattatatttctactgtgtaagatatgat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
53673014 |
tattacatttcttcattgttttctagacattatatttgtactttgtaagacatgat |
53673069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 53672916 - 53672954
Alignment:
| Q |
93 |
atccatgatgggactttgatgtaagtggtgttgtctact |
131 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
53672916 |
atccatcatgggactttgatgtaagtgatgttgtctact |
53672954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University