View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_23 (Length: 306)

Name: NF6507_low_23
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_23
NF6507_low_23
[»] chr7 (6 HSPs)
chr7 (19-306)||(4803541-4803828)
chr7 (169-249)||(37465274-37465354)
chr7 (169-249)||(6776848-6776928)
chr7 (169-247)||(37582510-37582588)
chr7 (169-247)||(37588805-37588883)
chr7 (193-246)||(49022130-49022183)
[»] chr1 (2 HSPs)
chr1 (215-303)||(23832786-23832874)
chr1 (91-158)||(30534049-30534116)
[»] chr3 (2 HSPs)
chr3 (250-306)||(37505271-37505327)
chr3 (193-246)||(37426059-37426112)
[»] chr8 (1 HSPs)
chr8 (61-166)||(29893902-29894007)
[»] chr2 (1 HSPs)
chr2 (67-166)||(38571246-38571346)
[»] chr4 (1 HSPs)
chr4 (101-158)||(44857139-44857196)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 4803828 - 4803541
Alignment:
Q  19 gttgtaattctacaggtaaaagttgcatagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803828 gttgtaattctacaggtaaaagttgcatagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttt 4803729  T
Q  119 tagcttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcataatcatgcacca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4803728 tagcttttgcaagttctgttaagaactaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcattatcatgcacca 4803629  T
Q  219 aaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803628 aaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 4803541  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 37465354 - 37465274
Alignment:
Q  169 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 249  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37465354 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactaatgttgctatgcttcctg 37465274  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 6776848 - 6776928
Alignment:
Q  169 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 249  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  6776848 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactattgttgctatgcttcctg 6776928  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 37582510 - 37582588
Alignment:
Q  169 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 247  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  37582510 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatgcttcc 37582588  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 37588805 - 37588883
Alignment:
Q  169 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 247  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| |||||    
T  37588805 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttcc 37588883  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 49022183 - 49022130
Alignment:
Q  193 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 246  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49022183 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 49022130  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 23832874 - 23832786
Alignment:
Q  215 accaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatga 303  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23832874 accaaaccggttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatga 23832786  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 30534049 - 30534116
Alignment:
Q  91 atagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 158  Q
    ||||||||| |||||| ||||| || |||||||| |||||||||| ||| | | ||||||||||||||    
T  30534049 atagctctgcaatttgattatgtttatttagcttgtgcaagttctattaggtattaggatcattaaaa 30534116  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 37505271 - 37505327
Alignment:
Q  250 taggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 306  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37505271 tagggtatttaacttcacctggtttagtagtaattggccaatggatcaaaatgaggt 37505327  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 37426059 - 37426112
Alignment:
Q  193 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 246  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37426059 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 37426112  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 29894007 - 29893902
Alignment:
Q  61 tgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaaga 160  Q
    ||||| |||||| ||||||||||||| |  |||||| || ||| || | ||| ||||||| ||| ||||||||| ||||  || ||||||||||||||||    
T  29894007 tgtgattataaactgtgtaattatgtgcatatagctatgcaatctgatcatgtttttttaacttgtgcaagttcggttagtaattaggatcattaaaaga 29893908  T
Q  161 tttttt 166  Q
    ||||||    
T  29893907 tttttt 29893902  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 38571246 - 38571346
Alignment:
Q  67 tataaattgtgtaattatgtccgcatagctctgtaatttgcttatgatttt-ttagcttttgcaagttctgttaagaactaggatcattaaaagattttt 165  Q
    |||||| ||||||||||||| |  ||| || || |||||| ||||| |||| ||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  38571246 tataaactgtgtaattatgtgcatataactatgcaatttgattatgttttttttagcttgtgcaagttcggttagtaattaggatcattaaaagattttt 38571345  T
Q  166 t 166  Q
    |    
T  38571346 t 38571346  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 44857196 - 44857139
Alignment:
Q  101 aatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 158  Q
    |||||| ||||| || |||||||| ||||||||| |||| ||| ||||||||||||||    
T  44857196 aatttgattatgtttatttagcttgtgcaagttcggttaggaattaggatcattaaaa 44857139  T

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