View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_24 (Length: 291)
Name: NF6507_low_24
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 30358836 - 30359109
Alignment:
| Q |
18 |
cacttaatatactctaatcgcattttgaagccactttctacgtcacaaattaatatannnnnnnnnnngttgctaccaagacatgaattttgttgtgttc |
117 |
Q |
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| T |
30358836 |
cacttaatatactctaatcacattttgaagcaactttctacgtcacaaattaattttttatttttatttttgctaccaagacatgagttttgttgtgttc |
30358935 |
T |
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| Q |
118 |
attgtatataaacatgtacagtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggttatctct |
217 |
Q |
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| T |
30358936 |
attgtatataaacatgtacagtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggttatctct |
30359035 |
T |
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| Q |
218 |
atctatttacctttagaaagcttttaaattatttattaaaagctattttgttttatatgaaattaattaagctt |
291 |
Q |
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| T |
30359036 |
atctatttacctttaggaagcttttaaattatttattaaaagctactttgttttatacgaaattaattaagctt |
30359109 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 24999217 - 24999271
Alignment:
| Q |
157 |
gaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggtt |
211 |
Q |
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| T |
24999217 |
gaaggtggaaaaggaccaagtatatgggatacctttactcataaatacccaggtt |
24999271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 7727761 - 7727801
Alignment:
| Q |
157 |
gaaggtggcaaaggaacaagtatatgggatacctttactca |
197 |
Q |
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| T |
7727761 |
gaaggtggcaaagggccaagtatatgggataccttcactca |
7727801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 42169542 - 42169465
Alignment:
| Q |
136 |
cagtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggttat |
213 |
Q |
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| T |
42169542 |
cagtatgaaggtgctgcaaaagaaggtgggagaggagcaagtatatgggacacctatactcataaatacccaggttat |
42169465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 42287664 - 42287737
Alignment:
| Q |
137 |
agtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggt |
210 |
Q |
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| T |
42287664 |
agtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggt |
42287737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 42159493 - 42159420
Alignment:
| Q |
137 |
agtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggt |
210 |
Q |
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| T |
42159493 |
agtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctacactcataagtatccaggt |
42159420 |
T |
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