View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_25 (Length: 290)

Name: NF6507_low_25
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_25
NF6507_low_25
[»] chr1 (3 HSPs)
chr1 (1-140)||(25812397-25812536)
chr1 (173-284)||(25812567-25812678)
chr1 (200-264)||(31909639-31909703)
[»] scaffold0066 (2 HSPs)
scaffold0066 (41-126)||(17143-17228)
scaffold0066 (187-264)||(16994-17071)
[»] chr6 (1 HSPs)
chr6 (1-140)||(14012572-14012711)
[»] chr4 (2 HSPs)
chr4 (1-70)||(7684068-7684137)
chr4 (1-79)||(32391808-32391886)
[»] chr8 (2 HSPs)
chr8 (7-94)||(6984737-6984824)
chr8 (187-254)||(6984544-6984608)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25812397 - 25812536
Alignment:
Q  1 tagttgatgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaaggtgtctctttctttctgatattcggtcactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25812397 tagttgatgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaaggtgtctctttctttctgatattcggtcactt 25812496  T
Q  101 gttcttgatcagtacgctcgaaaagtgcgctttggtggag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25812497 gttcttgatcagtacgctcgaaaagtgcgctttggtggag 25812536  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 25812567 - 25812678
Alignment:
Q  173 cccactctttggcgtttagttgttatcttggtgctcaagtttatttatcccttttgaagttatttggcatccttgttgttgtattttgtgctaagtgggt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  25812567 cccactctttggcgtttagttgttatcttggtgctcaagtttatttatcccttctgaagttatttggcatccttgttgttgtattttgtgctaagggggt 25812666  T
Q  273 tttgtcctatgc 284  Q
    ||||||||||||    
T  25812667 tttgtcctatgc 25812678  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 31909639 - 31909703
Alignment:
Q  200 ttggtgctcaagtttatttatcccttttgaagttatttggcatccttgttgttgtattttgtgct 264  Q
    |||||| ||||  |||||||||||||| | ||||||||| |||| || ||||||| |||||||||    
T  31909639 ttggtgttcaaaattatttatccctttaggagttatttgacatcattattgttgttttttgtgct 31909703  T

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Target: scaffold0066 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 17228 - 17143
Alignment:
Q  41 tcgttagtggcttggagcaagatcctaaggtgtctctttctttctgatattcggtcacttgttcttgatcagtacgctcgaaaagt 126  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||    
T  17228 tcgttagtggcttggagtaagatcctaaggcgtctctttctttctgatcttcggtcagttgttcgtgatcaatacgctcgaaaagt 17143  T

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Target: scaffold0066; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 17071 - 16994
Alignment:
Q  187 tttagttgttatcttggtgctcaagtttatttatcccttttgaagttatttggcatccttgttgttgtattttgtgct 264  Q
    |||||||||||||||| ||||||| ||| |||||||||| |  |||||||||||||||| |||||||| ||| |||||    
T  17071 tttagttgttatcttgctgctcaattttttttatcccttgtcgagttatttggcatcctggttgttgtttttggtgct 16994  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 14012711 - 14012572
Alignment:
Q  1 tagttgatgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaaggtgtctctttctttctgatattcggtcactt 100  Q
    ||||||||||||  || || ||||| |||| |||||||| || |||| |||||| ||| ||||| ||||||  ||||||||||| |||  || |||| ||    
T  14012711 tagttgatgttctctgcattgtctacggtccttcggtagctcattagcggcttgaagcgagatcttaaggtacctctttctttccgatcctcagtcattt 14012612  T
Q  101 gttcttgatcagtacgctcgaaaagtgcgctttggtggag 140  Q
    ||||||||||| | | || ||||||||| |||||||||||    
T  14012611 gttcttgatcaattcacttgaaaagtgctctttggtggag 14012572  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7684137 - 7684068
Alignment:
Q  1 tagttgatgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaagg 70  Q
    |||||||||||||||| ||  |||| |||||| |||||| |||||||||||||||||| |||||||||||    
T  7684137 tagttgatgttccttgcattttctacggtcttccggtagctcgttagtggcttggagcgagatcctaagg 7684068  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32391808 - 32391886
Alignment:
Q  1 tagttgatgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaaggtgtctcttt 79  Q
    |||||||||||||||| || ||||| ||| || |||||| | |||| ||||||||||| ||||||||||| ||||||||    
T  32391808 tagttgatgttccttgcattgtctacggttttacggtagcttgttaatggcttggagcgagatcctaaggagtctcttt 32391886  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 6984824 - 6984737
Alignment:
Q  7 atgttccttggatggtctatggtctttcggtagttcgttagtggcttggagcaagatcctaaggtgtctctttctttctgatattcgg 94  Q
    |||||||||| || ||||| |||||||| |||  |||||||||||||||||  ||||||||||||  |||| |||||| ||| |||||    
T  6984824 atgttccttgcattgtctacggtctttcagtaactcgttagtggcttggagtgagatcctaaggttcctctatctttccgatcttcgg 6984737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 6984608 - 6984544
Alignment:
Q  187 tttagttgttatcttggtgctcaagtttatttatcccttttgaagttatttggcatccttgttgttgt 254  Q
    |||||||||||||||||||||| | |||   ||| ||||||| ||||||||| ||| |||||||||||    
T  6984608 tttagttgttatcttggtgctcgatttt---tattccttttggagttatttgacattcttgttgttgt 6984544  T

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