View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_31 (Length: 250)
Name: NF6507_low_31
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8810202 - 8809966
Alignment:
| Q |
1 |
cataaattcctggccatactgtgtaatcacacttgttcataaatgtaaatgttgcccctgaaactaaaacccctgcatttgnnnnnnnnnnnnnnnnnnc |
100 |
Q |
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| T |
8810202 |
cataaattcctggccatactgtgtaatcacacttgttcataaatgtaaatgttgcccctgaaactaaaacccctgcatttgaaaaagtaaaagaaaaaac |
8810103 |
T |
|
| Q |
101 |
ataaacagttatttaannnnnnnn-gtgaattctaaaagaaagaaacatgacactcaattttgttgaattaatgaaagaactgaaatttacctttgaaaa |
199 |
Q |
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| T |
8810102 |
ataaacagttatttaatttttttttgtgaattctaaaagaaagaaacatgacactcaattttgttgaattaatgaaagaattgaaatttacctttgaaaa |
8810003 |
T |
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| Q |
200 |
tgaggaagagtatgacgcataagaagggctgaggata |
236 |
Q |
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| T |
8810002 |
tgaggaagagtatgacgcataagaagggctgaggata |
8809966 |
T |
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