View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_39 (Length: 232)

Name: NF6507_low_39
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_39
NF6507_low_39
[»] chr3 (3 HSPs)
chr3 (8-191)||(21086213-21086394)
chr3 (185-225)||(27082068-27082108)
chr3 (89-137)||(55350408-55350456)
[»] scaffold0753 (1 HSPs)
scaffold0753 (14-224)||(3404-3604)
[»] chr4 (4 HSPs)
chr4 (107-229)||(27432847-27432967)
chr4 (14-232)||(9243390-9243598)
chr4 (177-230)||(13961191-13961244)
chr4 (89-137)||(11960148-11960196)
[»] chr5 (2 HSPs)
chr5 (115-227)||(11992725-11992835)
chr5 (177-224)||(7958547-7958594)
[»] chr2 (2 HSPs)
chr2 (96-223)||(20480553-20480677)
chr2 (118-224)||(10423067-10423171)
[»] chr6 (1 HSPs)
chr6 (163-222)||(20471482-20471540)
[»] scaffold0008 (1 HSPs)
scaffold0008 (96-146)||(53591-53641)
[»] chr7 (1 HSPs)
chr7 (185-230)||(11669739-11669784)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 21086213 - 21086394
Alignment:
Q  8 tcatgagcaaattagaccaacctcgttcaaggtcttcttaaataacacaaacaccttctttattttttactatttaactaaaaacaccaatctcccttat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||  ||||||||| |||    
T  21086213 tcatgagcaaattagaccaacctcgttcaaggtcttcttaaataacacaaacacctcctctattttttactatttaactaaagac--caatctcccgtat 21086310  T
Q  108 tttgttatcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaa 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  21086311 tttgttatcaaattgacaagcacctcccttgtaatttaacacagcttaaactctattaattctatttgtttttttaactattaa 21086394  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 27082068 - 27082108
Alignment:
Q  185 caattaacttcttcatacgagtataaactcccttaattttc 225  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  27082068 caattaacttcttcatacgagtatgaactcgcttaattttc 27082108  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 55350456 - 55350408
Alignment:
Q  89 aaacaccaatctcccttattttgttatcaaattgacaagcacctccctt 137  Q
    |||||| || |||||||| ||||||||||||| ||||| ||||||||||    
T  55350456 aaacactaacctcccttactttgttatcaaatggacaaacacctccctt 55350408  T

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Target: scaffold0753 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 3404 - 3604
Alignment:
Q  14 gcaaattagaccaacctcgttcaaggtcttcttaaataacacaaacaccttctttattttttactatttaactaaaaacaccaatctcccttattttgtt 113  Q
    ||||||||||| ||||||  | ||||||||||||| |||||||||||  ||||||||||||||       ||||||  ||| | ||||| |||||| |||    
T  3404 gcaaattagactaacctcacttaaggtcttcttaagtaacacaaacatattctttatttttta-------actaaa--cactattctcctttatttcgtt 3494  T
Q  114 atcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaacttcttcatacgagtataaact 213  Q
    |||||||||| || |||||||| | |||||||| | || ||||||||| ||| |||||||| || ||||| |||||||||| ||||||||||||| || |    
T  3495 atcaaattgagaatcacctcccgtataatttaacagagtttaaactctgttacttctattt-gtgttttagcaattaactttttcatacgagtatgaaat 3593  T
Q  214 cccttaatttt 224  Q
    | |||||||||    
T  3594 ctcttaatttt 3604  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 27432967 - 27432847
Alignment:
Q  107 ttttgttatcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaacttcttcatacgagt 206  Q
    |||| |||||||||||||||||||||||| | |||| ||| |||| ||||||| ||||||||| ||||  ||||| | ||||||||||||||||||||||    
T  27432967 tttttttatcaaattgacaagcacctcccatataatataacacagtttaaactttattaattccattt--tttttgagcaattaacttcttcatacgagt 27432870  T
Q  207 ataaactcccttaattttcgacc 229  Q
    || ||||| |||| |||| ||||    
T  27432869 atgaactcacttagtttttgacc 27432847  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 9243598 - 9243390
Alignment:
Q  14 gcaaattagaccaacctcgttcaaggtcttcttaaataacacaaacaccttctttattttttactatttaactaaaaacaccaatctcccttattttgtt 113  Q
    ||||||||||| ||||||  | ||||||||||||| |||||||||||    ||||||||||||       ||||||  ||| | ||||| ||||||  ||    
T  9243598 gcaaattagactaacctcacttaaggtcttcttaattaacacaaacataccctttatttttta-------actaaa--cactattctcctttatttcatt 9243508  T
Q  114 atcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaacttcttcatacgagtataaact 213  Q
    |||||||||| || ||| |||| | |||||||| || | ||||||||| ||||||||||||  || |||| |||||||||| ||||||||||||| ||||    
T  9243507 atcaaattgagaatcacttcccatataatttaacacggtttaaactctgttaattctattta-ttatttagcaattaactttttcatacgagtatgaact 9243409  T
Q  214 cccttaattttcgaccact 232  Q
    | |||||||||| ||||||    
T  9243408 ctcttaattttcaaccact 9243390  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 13961244 - 13961191
Alignment:
Q  177 ttttttaacaattaacttcttcatacgagtataaactcccttaattttcgacca 230  Q
    |||||| || ||||||||||| |||||||||| |||||| ||||||||| ||||    
T  13961244 tttttttaccattaacttctttatacgagtatgaactcctttaattttcaacca 13961191  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 11960148 - 11960196
Alignment:
Q  89 aaacaccaatctcccttattttgttatcaaattgacaagcacctccctt 137  Q
    |||||| || ||||||||||||||||||||||||| || |||| |||||    
T  11960148 aaacacaaacctcccttattttgttatcaaattgaaaaacaccaccctt 11960196  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 11992725 - 11992835
Alignment:
Q  115 tcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaacttcttcatacgagtataaactc 214  Q
    |||||||||||||||| | |||| |||||||| || | ||||||| | ||||||| ||||  || || | |||||||||||||||||||||||| |||||    
T  11992725 tcaaattgacaagcacttgccttataatttaatacggtttaaactttgttaattccattt--ttcttgagcaattaacttcttcatacgagtatgaactc 11992822  T
Q  215 ccttaattttcga 227  Q
     ||||||||||||    
T  11992823 acttaattttcga 11992835  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 7958547 - 7958594
Alignment:
Q  177 ttttttaacaattaacttcttcatacgagtataaactcccttaatttt 224  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  7958547 ttttttagcaattaacttctccatacgagtataaactcacttaatttt 7958594  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 20480553 - 20480677
Alignment:
Q  96 aatctcccttattttgttatcaaattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaattaacttc 195  Q
    |||||||||||||| | ||| ||| |||||||| | ||| || |||||||| || | |||| |  | ||||||| |||   ||||||| |||||||||||    
T  20480553 aatctcccttatttagctatgaaaatgacaagctcttccgttataatttaacacggtttaagccttgttaattccatt---ttttttagcaattaacttc 20480649  T
Q  196 ttcatacgagtataaactcccttaattt 223  Q
    || |||||||||| ||||||||||||||    
T  20480650 tttatacgagtatgaactcccttaattt 20480677  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 10423171 - 10423067
Alignment:
Q  118 aattgacaagcacctcccttgtaatttaaaacagcttaaactctattaattctatttggttttttaacaatt-aacttcttcatacgagtataaactccc 216  Q
    ||||||||||||| |||| | |||| ||| ||   |||||||   ||||||||||||   |||||| ||||| ||||||| ||||||||||||||||| |    
T  10423171 aattgacaagcacttcccctataatataacacgttttaaacttcgttaattctattt---tttttagcaatttaacttctccatacgagtataaactcac 10423075  T
Q  217 ttaatttt 224  Q
    ||||||||    
T  10423074 ttaatttt 10423067  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 20471540 - 20471482
Alignment:
Q  163 ttaattctatttggttttttaacaattaacttcttcatacgagtataaactcccttaatt 222  Q
    ||||||||||||  ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  20471540 ttaattctattta-ttttttaacaattaacttctttatacgactatgaactcccttaatt 20471482  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 53641 - 53591
Alignment:
Q  96 aatctcccttattttgttatcaaattgacaagcacctcccttgtaatttaa 146  Q
    |||||||||||||| ||||||||| ||||||||| |||| || ||||||||    
T  53641 aatctcccttatttagttatcaaagtgacaagcaactcctttataatttaa 53591  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 11669739 - 11669784
Alignment:
Q  185 caattaacttcttcatacgagtataaactcccttaattttcgacca 230  Q
    |||||||||||||||||||||||| ||||| ||| || ||||||||    
T  11669739 caattaacttcttcatacgagtatgaactcacttcatattcgacca 11669784  T

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