View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_4 (Length: 629)
Name: NF6507_low_4
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 1336548 - 1335949
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaagctatcacaaagtaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
1336548 |
acaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtatttgttccagaagaagatattatcaagctatcacaaagtaag |
1336449 |
T |
|
| Q |
101 |
actttgtttcattcaatannnnnnnnactatatctaaaatttcgactaatgtatgtaaatgtaaatacatacataagcttacattctcattatataaacc |
200 |
Q |
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|||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1336448 |
actttgtttcattcaatattttttttactttatctaaaatttcg------gtatgtaaatgtaaatacata----agcttacattctcattatataaacc |
1336359 |
T |
|
| Q |
201 |
aattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaagttttatgcaaactcatcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1336358 |
aattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaagttttatgcaaactcatcat |
1336259 |
T |
|
| Q |
301 |
catatttataatctatatattgtnnnnnnnnnntcatattgatataatcttatcaaatcataatattatttttaaaatatgtttcttttagggcaacaaa |
400 |
Q |
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| T |
1336258 |
catatttataatctatatattgtcaaaaaaaa-tcatattgatataatcttatcaaatcataatattatttttaaaatatgtttcttttagggcaacaaa |
1336160 |
T |
|
| Q |
401 |
attgtgaaatatactaatggtaaaatatgtcttttatgatgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaa |
500 |
Q |
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| T |
1336159 |
attgtgaaatatactaatggtaaaatatgtcttttatgatgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaa |
1336060 |
T |
|
| Q |
501 |
ggcgacatgtactttgagctagaagaaaatgaccttgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttc |
600 |
Q |
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| T |
1336059 |
ggcgacatgtactttgagctagaggaaaatgaccttgaagcttcacaactatatccaaattacaactacacatccattgatcaacttcttgataaatttc |
1335960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 433 - 607
Target Start/End: Complemental strand, 1320618 - 1320441
Alignment:
| Q |
433 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaaggcgacatg---tactttgagctagaagaaaa |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||| ||| | |
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| T |
1320618 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaaga |
1320519 |
T |
|
| Q |
530 |
tgaccttgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttga |
607 |
Q |
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||| ||||||||||||| |||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
1320518 |
tgatcttgaagcttcacaactataccctggttacaactatacatcaattgatcaacttcttgataaatttcttgttga |
1320441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1320786 - 1320682
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaagctatcacaaagtaag |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
1320786 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttgttccagaggaagatattgtcaagctatcacaaagtaat |
1320687 |
T |
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| Q |
101 |
acttt |
105 |
Q |
| |
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||||| |
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| T |
1320686 |
acttt |
1320682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1264116 - 1264218
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaagctatcacaaagtaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1264116 |
acaaaatgagttgatatcactatgggagcttaaaaatggtcaaatccttaacaaagtttttgctccagaagaagatattgtcaagctatcacaaagtaag |
1264215 |
T |
|
| Q |
101 |
act |
103 |
Q |
| |
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||| |
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| T |
1264216 |
act |
1264218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 439 - 611
Target Start/End: Original strand, 1264310 - 1264485
Alignment:
| Q |
439 |
atgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaaggcgacat---gtactttgagctagaagaaaatgacct |
535 |
Q |
| |
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|||||| ||||||||||||| | |||| ||| ||||||| ||||||| |||||||| |||| ||| | | ||||||||||||| ||| ||||||| |
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| T |
1264310 |
atgcagttttaccccctccacacaatataccagtttccattcttcatagtgtatttgttcaaggggaccttgtgaactttgagctagaggaagatgacct |
1264409 |
T |
|
| Q |
536 |
tgaagcttcacgactatatccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcct |
611 |
Q |
| |
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||||||||||| ||||||||| ||||| || |||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
1264410 |
tgaagcttcacaactatatcctaattataattacatgtccattgatcaacttcttgataaatttttggttgatcct |
1264485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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