View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_40 (Length: 229)

Name: NF6507_low_40
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_40
NF6507_low_40
[»] scaffold0257 (1 HSPs)
scaffold0257 (104-211)||(16934-17041)
[»] chr3 (8 HSPs)
chr3 (143-212)||(28183391-28183460)
chr3 (133-182)||(28482426-28482476)
chr3 (133-182)||(28511238-28511288)
chr3 (155-212)||(28147198-28147255)
chr3 (171-211)||(17746735-17746774)
chr3 (171-211)||(19048055-19048094)
chr3 (160-208)||(28053163-28053211)
chr3 (160-208)||(28063588-28063636)


Alignment Details
Target: scaffold0257 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 16934 - 17041
Alignment:
Q  104 gtgggaagtgtttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 203  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16934 gtgggaagtttttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 17033  T
Q  204 tattttat 211  Q
    ||||||||    
T  17034 tattttat 17041  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 28183391 - 28183460
Alignment:
Q  143 atataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatg 212  Q
    |||| ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatg 28183460  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28482476 - 28482426
Alignment:
Q  133 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgta 182  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28482476 ttacagtagtatataaaatatctccatagtttttttatcatctctattgta 28482426  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28511288 - 28511238
Alignment:
Q  133 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgta 182  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28511288 ttacagtagtatataaaatatctccatagtttttttatcatctctattgta 28511238  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 28147198 - 28147255
Alignment:
Q  155 tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatg 212  Q
    |||| ||| ||||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  28147198 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatg 28147255  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 17746774 - 17746735
Alignment:
Q  171 atctctattgtaattacagcactttgttattcttattttat 211  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  17746774 atctctattgtacttacag-actttgttattcttattttat 17746735  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 19048094 - 19048055
Alignment:
Q  171 atctctattgtaattacagcactttgttattcttattttat 211  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  19048094 atctctattgtacttacag-actttgttattcttattttat 19048055  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 28053163 - 28053211
Alignment:
Q  160 agctttttatcatctctattgtaattacagcactttgttattcttattt 208  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28053163 agctttttattatctctattgtacttacaggacattgttattctcattt 28053211  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 28063588 - 28063636
Alignment:
Q  160 agctttttatcatctctattgtaattacagcactttgttattcttattt 208  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28063588 agctttttattatctctattgtacttacaggacattgttattctcattt 28063636  T

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