View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_41 (Length: 226)

Name: NF6507_low_41
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_41
NF6507_low_41
[»] chr7 (1 HSPs)
chr7 (13-226)||(32187891-32188104)
[»] chr4 (2 HSPs)
chr4 (66-135)||(27395444-27395513)
chr4 (88-166)||(24806762-24806840)
[»] chr8 (1 HSPs)
chr8 (87-135)||(3714753-3714801)
[»] chr6 (2 HSPs)
chr6 (88-122)||(33550196-33550230)
chr6 (73-129)||(27223713-27223769)
[»] chr5 (2 HSPs)
chr5 (73-142)||(6217399-6217468)
chr5 (88-133)||(16750322-16750367)
[»] chr3 (2 HSPs)
chr3 (73-129)||(257840-257896)
chr3 (69-157)||(21568305-21568393)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 32188104 - 32187891
Alignment:
Q  13 aaaatgaatgtcaacgttgatggacaatttcaatttcagatannnnnnngatcaacgaattgcacaatcaactgttattttaaaattttaatatattaaa 112  Q
    ||||||||||||| |||||||||||||||||||| |||||||       ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  32188104 aaaatgaatgtcagcgttgatggacaatttcaatgtcagatacttttttgattaacgaattgcacaatcaactgctattttaaaattttaatatattaaa 32188005  T
Q  113 cgattattgtaactacttattacgtattcatagaccaaagtgactcctacctcaaaattagtcctcatgcacttcacatggctacaattcttctcaatca 212  Q
    ||| |||||||||||||| |||  | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32188004 cgactattgtaactacttgttatatgttcatagaccaaagtgactcgtacctcaaaattagtcttcatgcacttcacatggctacaattcttctcaatca 32187905  T
Q  213 ttgagggcgcaata 226  Q
    ||||||||||||||    
T  32187904 ttgagggcgcaata 32187891  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 27395513 - 27395444
Alignment:
Q  66 aacgaattgcacaatcaactgttattttaaaattttaatatattaaacgattattgtaactacttattac 135  Q
    |||||| || |||||||| | ||||||||||||||| ||||||| ||  ||| |||||||||||||||||    
T  27395513 aacgaagtgaacaatcaaatattattttaaaattttgatatattgaagaattgttgtaactacttattac 27395444  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 24806762 - 24806840
Alignment:
Q  88 tattttaaaattttaatatattaaacgattattgtaactacttattacgtattcatagaccaaagtgactcctacctca 166  Q
    |||||| |||||| |||| |||||  || |||||||||||||||||||| ||||| | |||||| |||||  |||||||    
T  24806762 tattttcaaatttcaatacattaagggactattgtaactacttattacgcattcagataccaaaatgactattacctca 24806840  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 3714801 - 3714753
Alignment:
Q  87 ttattttaaaattttaatatattaaacgattattgtaactacttattac 135  Q
    ||||||| |||||||||||||||||| || ||||||||||| |||||||    
T  3714801 ttattttgaaattttaatatattaaaggactattgtaactatttattac 3714753  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 33550230 - 33550196
Alignment:
Q  88 tattttaaaattttaatatattaaacgattattgt 122  Q
    ||||||||||||||||||||||||| |||||||||    
T  33550230 tattttaaaattttaatatattaaaggattattgt 33550196  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 27223769 - 27223713
Alignment:
Q  73 tgcacaatcaactgttattttaaaattttaatatattaaacgattattgtaactact 129  Q
    ||||||||||| ||||||||| |||||| |||| ||| || ||||||||| ||||||    
T  27223769 tgcacaatcaaatgttattttgaaatttcaatacattcaaagattattgttactact 27223713  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 6217468 - 6217399
Alignment:
Q  73 tgcacaatcaactgttattttaaaattttaatatattaaacgattattgtaactacttattacgtattca 142  Q
    ||||||||||  | ||||||||||||||| ||| |||||  || |||||||||||||| |||| ||||||    
T  6217468 tgcacaatcagatattattttaaaattttgatacattaagtgactattgtaactactttttacatattca 6217399  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 16750322 - 16750367
Alignment:
Q  88 tattttaaaattttaatatattaaacgattattgtaactacttatt 133  Q
    |||||||||||||| ||| |||||| ||||||||| ||||||||||    
T  16750322 tattttaaaattttgatacattaaaagattattgtgactacttatt 16750367  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 257896 - 257840
Alignment:
Q  73 tgcacaatcaactgttattttaaaattttaatatattaaacgattattgtaactact 129  Q
    ||||||||||| ||||||||| |||||| |||| ||| || ||||||||| ||||||    
T  257896 tgcacaatcaaatgttattttgaaatttcaatacattcaaagattattgttactact 257840  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 21568393 - 21568305
Alignment:
Q  69 gaattgcacaatcaactgttattttaaaattttaatatattaaacgattattgtaactacttattacgtattcatagaccaaagtgact 157  Q
    |||||||||||||| |  ||||||| |||||||  || ||| |  ||||||||| |||||| ||||| |||| | ||||||||||||||    
T  21568393 gaattgcacaatcagcgattattttgaaatttttgtacattgagagattattgtgactactcattacatattaaaagaccaaagtgact 21568305  T

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