View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6507_low_6 (Length: 574)

Name: NF6507_low_6
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6507_low_6
NF6507_low_6
[»] chr3 (26 HSPs)
chr3 (15-560)||(29100303-29100846)
chr3 (386-560)||(5366095-5366268)
chr3 (368-433)||(25517446-25517511)
chr3 (355-427)||(5373082-5373154)
chr3 (328-423)||(29196642-29196737)
chr3 (328-423)||(44700733-44700828)
chr3 (369-423)||(23410571-23410625)
chr3 (310-418)||(21156703-21156811)
chr3 (391-423)||(33386455-33386487)
chr3 (369-455)||(40734371-40734454)
chr3 (371-423)||(47649846-47649898)
chr3 (369-433)||(51398687-51398751)
chr3 (328-423)||(4386695-4386789)
chr3 (328-423)||(9666709-9666804)
chr3 (369-428)||(54740014-54740073)
chr3 (370-432)||(7762140-7762202)
chr3 (369-423)||(23392151-23392205)
chr3 (369-423)||(29812936-29812990)
chr3 (369-423)||(40735256-40735310)
chr3 (378-453)||(26386695-26386767)
chr3 (327-415)||(40519447-40519536)
chr3 (371-423)||(3715760-3715812)
chr3 (369-455)||(5236668-5236751)
chr3 (369-455)||(5260535-5260618)
chr3 (391-423)||(27986236-27986268)
chr3 (369-455)||(32744638-32744721)
[»] chr1 (25 HSPs)
chr1 (247-559)||(25116339-25116656)
chr1 (307-554)||(8281467-8281712)
chr1 (328-423)||(45644596-45644692)
chr1 (328-423)||(50167429-50167525)
chr1 (328-415)||(50169459-50169547)
chr1 (335-458)||(10997201-10997326)
chr1 (492-559)||(35109424-35109490)
chr1 (369-428)||(35109319-35109378)
chr1 (335-423)||(28265807-28265896)
chr1 (369-455)||(28223633-28223716)
chr1 (371-423)||(47703704-47703756)
chr1 (369-432)||(3156739-3156802)
chr1 (328-414)||(8871310-8871397)
chr1 (369-432)||(28220458-28220521)
chr1 (369-432)||(31659111-31659174)
chr1 (370-455)||(44455034-44455116)
chr1 (369-423)||(3189204-3189258)
chr1 (369-423)||(3198021-3198075)
chr1 (369-423)||(3206860-3206914)
chr1 (328-423)||(777060-777157)
chr1 (492-562)||(22819570-22819641)
chr1 (359-432)||(49918212-49918285)
chr1 (492-559)||(9022793-9022857)
chr1 (391-423)||(24202556-24202588)
chr1 (492-536)||(29651979-29652023)
[»] chr2 (15 HSPs)
chr2 (330-562)||(18674130-18674357)
chr2 (385-562)||(28770557-28770730)
chr2 (369-488)||(12632895-12633012)
chr2 (328-423)||(33162691-33162786)
chr2 (328-423)||(36773380-36773476)
chr2 (500-562)||(2869587-2869648)
chr2 (369-455)||(39284758-39284841)
chr2 (372-423)||(2869464-2869515)
chr2 (369-432)||(36318241-36318304)
chr2 (369-432)||(36988307-36988370)
chr2 (492-562)||(2837917-2837986)
chr2 (496-562)||(15903781-15903846)
chr2 (401-430)||(41586351-41586380)
chr2 (369-455)||(2334629-2334712)
chr2 (371-423)||(34682102-34682154)
[»] scaffold0002 (1 HSPs)
scaffold0002 (382-561)||(14824-15000)
[»] chr8 (23 HSPs)
chr8 (322-562)||(8863348-8863582)
chr8 (328-423)||(5689102-5689198)
chr8 (330-456)||(31513060-31513186)
chr8 (307-430)||(11712237-11712361)
chr8 (328-456)||(18141652-18141777)
chr8 (369-456)||(29796534-29796618)
chr8 (369-455)||(4731531-4731614)
chr8 (492-560)||(7493060-7493127)
chr8 (369-455)||(30143215-30143298)
chr8 (369-455)||(43036296-43036379)
chr8 (369-455)||(44303727-44303810)
chr8 (392-423)||(3051394-3051425)
chr8 (378-455)||(6598854-6598928)
chr8 (378-455)||(6674307-6674381)
chr8 (328-423)||(30291424-30291519)
chr8 (500-562)||(5990456-5990517)
chr8 (369-423)||(42498067-42498121)
chr8 (328-395)||(3232080-3232148)
chr8 (391-423)||(4696399-4696431)
chr8 (369-455)||(12702850-12702933)
chr8 (369-455)||(15212659-15212742)
chr8 (369-455)||(33352023-33352106)
chr8 (335-430)||(34476945-34477041)
[»] chr6 (10 HSPs)
chr6 (376-456)||(30517898-30517978)
chr6 (392-456)||(1114890-1114955)
chr6 (363-423)||(31076699-31076759)
chr6 (328-423)||(3039157-3039251)
chr6 (369-432)||(9183263-9183326)
chr6 (378-455)||(26954497-26954571)
chr6 (492-562)||(14521814-14521883)
chr6 (500-562)||(33721453-33721515)
chr6 (492-552)||(21801231-21801291)
chr6 (391-423)||(24435763-24435795)
[»] chr7 (23 HSPs)
chr7 (328-423)||(41317688-41317784)
chr7 (328-423)||(12098113-12098209)
chr7 (369-455)||(47676348-47676431)
chr7 (362-455)||(29990921-29991011)
chr7 (366-428)||(4253766-4253828)
chr7 (331-423)||(36146663-36146756)
chr7 (369-455)||(48491452-48491535)
chr7 (328-423)||(24526138-24526233)
chr7 (369-432)||(30024964-30025027)
chr7 (361-423)||(3047528-3047590)
chr7 (492-562)||(5817157-5817226)
chr7 (378-432)||(26417198-26417252)
chr7 (391-433)||(27984711-27984753)
chr7 (369-423)||(43864117-43864171)
chr7 (378-423)||(6570476-6570521)
chr7 (378-423)||(31105634-31105679)
chr7 (391-436)||(40808485-40808530)
chr7 (369-455)||(1113530-1113613)
chr7 (391-423)||(2647488-2647520)
chr7 (369-455)||(4178648-4178731)
chr7 (376-432)||(18126524-18126580)
chr7 (369-455)||(19502051-19502134)
chr7 (369-455)||(31733181-31733264)
[»] chr5 (13 HSPs)
chr5 (366-428)||(13695940-13696002)
chr5 (493-562)||(2630372-2630440)
chr5 (369-423)||(9049596-9049650)
chr5 (310-418)||(5611416-5611524)
chr5 (371-423)||(10282028-10282080)
chr5 (369-455)||(28750867-28750950)
chr5 (492-559)||(11181719-11181785)
chr5 (369-432)||(13488076-13488139)
chr5 (369-432)||(42428662-42428725)
chr5 (331-428)||(5007385-5007483)
chr5 (370-432)||(32636698-32636760)
chr5 (369-422)||(39468791-39468844)
chr5 (376-455)||(42426447-42426523)
[»] scaffold0016 (2 HSPs)
scaffold0016 (369-562)||(102260-102450)
scaffold0016 (369-423)||(114463-114517)
[»] chr4 (25 HSPs)
chr4 (369-456)||(873286-873371)
chr4 (369-455)||(12739762-12739845)
chr4 (369-455)||(12747968-12748051)
chr4 (328-423)||(46147596-46147692)
chr4 (369-456)||(8114536-8114623)
chr4 (401-562)||(37782003-37782160)
chr4 (369-423)||(5370327-5370381)
chr4 (492-562)||(34670552-34670621)
chr4 (492-560)||(1983188-1983255)
chr4 (322-428)||(21704064-21704172)
chr4 (331-423)||(36463643-36463735)
chr4 (362-430)||(37755159-37755227)
chr4 (369-455)||(48142915-48142998)
chr4 (369-455)||(52082869-52082952)
chr4 (369-432)||(30000037-30000100)
chr4 (369-432)||(52093896-52093959)
chr4 (328-423)||(52467596-52467691)
chr4 (369-423)||(9927698-9927752)
chr4 (369-422)||(21548643-21548697)
chr4 (370-423)||(29254368-29254421)
chr4 (369-455)||(5429552-5429635)
chr4 (369-455)||(37740499-37740582)
chr4 (369-455)||(52095574-52095657)
chr4 (369-455)||(54200118-54200201)
chr4 (369-455)||(56178848-56178931)
[»] scaffold0140 (1 HSPs)
scaffold0140 (391-423)||(8208-8240)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Complemental strand, 29100846 - 29100303
Alignment:
Q  15 tatgagtgtagctttgtatttttatgtnnnnnnngtaagttcaaatgatccacttctgttccataaggttaaaaaa--cagttaaaaatgctattattgg 112  Q
    |||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  29100846 tatgagtgtagctttgtatttttatgtaaaaaaagtaagttcaaatgatctacttctgttccataaggtaaaaaaaaacagttaaaaatgctattattgg 29100747  T
Q  113 cctattttatacgagtatttgacatgtgttgaaattgactcaaaattgaggttgaaacatcgtaaaaaattgtggcacaattttgtttcgaaatttattg 212  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |    
T  29100746 cctgttttattcgagtatttgacatgtgttgaaattgactcaaaattgaggttgaaacatcgtcaaaaatcgtggcacaattttgtttcgaaatttatcg 29100647  T
Q  213 tatctcgaagggnnnnnnntcatggcacaattaatggataacagtcagttcatattatgtacgaattgcaaattgtggcacgatgtatcagagaacgatt 312  Q
    ||||||||||||       |||||||||||||| |||||||||||    ||||||| |||||||| ||||||||||||||||||||||  ||||||||||    
T  29100646 tatctcgaagggaaaaaaatcatggcacaattagtggataacagt----tcatattgtgtacgaactgcaaattgtggcacgatgtattggagaacgatt 29100551  T
Q  313 ttctcgagccatgtgcactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggtt 412  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||    
T  29100550 ttctcgagccttgtgcactatttaaggctttattcttcattctttggtagagtttttagagaaagaaacttgggaaaccaaaggagggaagtttagggtt 29100451  T
Q  413 gagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattatattaattgaaggataaaaaagtttcctt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29100450 gagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtggtgagattatattaattgaaggataaaaaagtttcctt 29100351  T
Q  513 tagtattttctctttggattcatttatgagtgtgggtgacttgaaaaa 560  Q
    ||||||| ||||||  ||||||||||||||||| ||||||||||||||    
T  29100350 tagtattatctcttatgattcatttatgagtgtaggtgacttgaaaaa 29100303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 560
Target Start/End: Original strand, 5366095 - 5366268
Alignment:
Q  386 gaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattata 485  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||  ||||| |||||  ||||| ||||| | ||||  | |||||  |    
T  5366095 gaaaccataggagataactttagggttgagagtctttggtgagagtttatttcttgagttggaaaaca--tttgtaaacaccttgggtagtaagatttca 5366192  T
Q  486 ttaatt-gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaa 560  Q
     ||||| |||||||  |||||||||||||||| ||||| ||| |||||||||||| ||||||||||||| ||||||    
T  5366193 ataattggaaggatcgaaaagtttcctttagtgttttcgcttaggattcatttattagtgtgggtgactagaaaaa 5366268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 25517511 - 25517446
Alignment:
Q  368 taagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagttt 433  Q
    ||||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  25517511 taagagaaagaaatttgggaaaccaaaagaatgaactttagggttgagtgtctttggtgagagttt 25517446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 5373082 - 5373154
Alignment:
Q  355 tttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtga 427  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||||  ||||||| ||||||| |||||||||||    
T  5373082 tttggtagagtttcaagagagagaaacttgaaaaatcaaaggaggtaactttaaggttgagagtctttggtga 5373154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 29196737 - 29196642
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||||  |||| |  |||||| | ||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  29196737 cactatttaaggcttcattcttcattttttgagagagctacaagagagaaaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 29196642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 44700828 - 44700733
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||  | |||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||  |||||||    
T  44700828 cactatttaaggcttcattcttcatttttgagaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgatggtctttg 44700733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 23410625 - 23410571
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| ||   |||||||||||||||||||||||||||||||||    
T  23410625 aagagagagaaacttgggattgcaaaggagagaactttagggttgagtgtctttg 23410571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 21156811 - 21156703
Alignment:
Q  310 attttctcgagccatgtgcactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagg 409  Q
    ||||||||||| | ||| ||  ||||||| ||| |||||||||  ||||  |||| || |||||| ||||||||| ||||| || |||| |||||||||     
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttgaaagagcttcaagagagagaaacttgtgaaactaatggagggaactttaga 21156712  T
Q  410 gttgagtgt 418  Q
    |||||||||    
T  21156711 gttgagtgt 21156703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 33386455 - 33386487
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||||||||||||||||||||||||    
T  33386455 caaaggagagaactttagggttgagtgtctttg 33386487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 40734371 - 40734454
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||  ||| ||||||||| ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  40734371 aagagacagaaacttggaaaatcaaaggagataactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 40734454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 47649898 - 47649846
Alignment:
Q  371 gagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| ||||||||| |||  ||||||||| |||||||||||||||||||||||    
T  47649898 gagatagaaacttgggaatacaaaggagataactttagggttgagtgtctttg 47649846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 51398687 - 51398751
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagttt 433  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||||    
T  51398687 aagagatagaaacttgggaaatcaaaggaggtaactttagggttgagagtctttgattagagttt 51398751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 4386695 - 4386789
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||  ||||   | || ||| |||| |||||||||| ||  ||||||||  |||||||||||||||||||||||    
T  4386695 cactatttaaggcttcattcttcatgatttgtgtgtgtctta-gagagagaaacttgaaaatacaaaggaggtaactttagggttgagtgtctttg 4386789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 9666804 - 9666709
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||| ||| |||||||||| ||  |||||| || |||||| ||| ||| | |||| |||| |||  ||||||||||||||| |||||||    
T  9666804 cactatttaagacttcattcttcatttttgagtagagcttcaagagagagacactagggaaatcaaatgaggtaactttagggttgagggtctttg 9666709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 54740073 - 54740014
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgag 428  Q
    ||||||||||||||| |||||  |||||||  ||||||||||||||  ||||||||||||    
T  54740073 aagagaaagaaacttaagaaattaaaggaggtaactttagggttgaaagtctttggtgag 54740014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 7762140 - 7762202
Alignment:
Q  370 agagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    ||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  7762140 agagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 7762202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 23392205 - 23392151
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| ||   |||||||||||| ||||||||||||||||||||    
T  23392205 aagagagagaaacttgggactgcaaaggagagaaatttagggttgagtgtctttg 23392151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 29812936 - 29812990
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  29812936 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 29812990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 40735256 - 40735310
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  40735256 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 40735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 26386767 - 26386695
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaaca 453  Q
    ||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||||||||||||||||    
T  26386767 aaacttgggaaatcaaaggaggtaactttagggttgagagtctttgattagagt---tctcttaggttgggaaaca 26386695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 40519536 - 40519447
Alignment:
Q  327 gcactatttaaggctttattcttcattctttg-gtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgag 415  Q
    ||||||| |||||||| |||| ||||   ||| |||||| || |||||| |||||||||||||| |||| |||| || ||||||||||||    
T  40519536 gcactatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaacttgagaaatcaaatgagataattttagggttgag 40519447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 3715760 - 3715812
Alignment:
Q  371 gagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| |||||||||||||  ||||||||  |||||||||||||| ||||||||    
T  3715760 gagagagaaacttgagaatacaaaggaggtaactttagggttgaatgtctttg 3715812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 5236751 - 5236668
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| | ||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  5236751 aagagagagaaacttgggaaatcgaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 5236668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 5260618 - 5260535
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  |||||||||||| || ||||||| | |||||   | |||| ||||||||||||||    
T  5260618 aagagagagaaacttgggaaatcaaaggaggcaactttagggtttagggtctttgattagagt---tctcttgggttgggaaacatt 5260535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 27986236 - 27986268
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||| ||||||||||||||||||||||||    
T  27986236 caaaggagggaactttagggttgagtgtctttg 27986268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 32744721 - 32744638
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| | ||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  32744721 aagagagaaaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 32744638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 247 - 559
Target Start/End: Original strand, 25116339 - 25116656
Alignment:
Q  247 tggataacagtcagttcatattatgtacgaattgcaaattgtggcacgatgt------atcagagaacgattttctcgagccatgtgcactatttaaggc 340  Q
    ||||||||| |||||| ||| |||||||||| ||||||| ||||||||||||      || |||| | |||||||||  | |||||||||||| |||| |    
T  25116339 tggataacaatcagtttatactatgtacgaactgcaaatcgtggcacgatgtgtggaaattagagcatgattttctcaggtcatgtgcactatataagtc 25116438  T
Q  341 tttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttctt 440  Q
    || |||||||||  ||||  ||||| | |||||| |||||||||| ||| |||| ||| ||||||||| ||||||||||||| |||||||||||||| ||    
T  25116439 ttcattcttcatgttttgagagagtatgaagagagagaaacttgaaaaatcaaacgagggaactttagagttgagtgtcttttgtgagagtttatttatt 25116538  T
Q  441 aggttgggaaacatttttgtgaacaca-tcgggtgctgagattatattaattgaaggataaaaaagtttcctttagtattttctctttggattcatttat 539  Q
     ||||||||||||  ||||| |||||| | ||||  |||||||  |||| ||||||||| |||||  || ||||||| |||||||||  |||| ||||||    
T  25116539 gggttgggaaaca--tttgtaaacacattagggtagtgagatttcattatttgaaggattaaaaaaatttctttagtgttttctcttaagatttatttat 25116636  T
Q  540 gagtgtgggtgacttgaaaa 559  Q
    |||||||| |||||||||||    
T  25116637 gagtgtggatgacttgaaaa 25116656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 554
Target Start/End: Complemental strand, 8281712 - 8281467
Alignment:
Q  307 acgattttctcgagccatgtgcactatttaaggctttattcttca--ttctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaact 404  Q
    |||||||||||| | | | ||||||||||||||||| ||||||||  || ||| | |||||| ||||| | |||||||||  ||| ||||||||||||||    
T  8281712 acgattttctcgggacctatgcactatttaaggcttcattcttcacttttttttggagagttataagatatagaaacttggaaaatcaaaggagagaact 8281613  T
Q  405 ttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattatattaattgaaggataaaaaa 504  Q
    ||||||||| |  |||||| ||||||||| ||||||  |||||||| ||  ||||| ||||| | ||||  ||||||   ||||   |||| ||||||||    
T  8281612 ttagggttgggcatctttgatgagagttt-tttcttgtgttgggaacca--tttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaa 8281516  T
Q  505 gtttcctttagtattttctctttggattcatttatgagtgtgggtgactt 554  Q
      |||||||||| ||||||||||||||||| || |||||| |||||||||    
T  8281515 acttcctttagtgttttctctttggattca-ttgtgagtgcgggtgactt 8281467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 45644692 - 45644596
Alignment:
Q  328 cactatttaaggctttattcttcattcttt-ggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||||||||||||||||| ||| || |||| || |||||| | ||||| | |||| ||||||||| ||||||||||||||| |||||||    
T  45644692 cactatttaaggctttattcttcattttttgggaagagcttcaagagagaaaaactagggaaatcaaaggagataactttagggttgagggtctttg 45644596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 50167525 - 50167429
Alignment:
Q  328 cactatttaaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||||||| ||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||| |||||||    
T  50167525 cactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgagggtctttg 50167429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 50169547 - 50169459
Alignment:
Q  328 cactatttaaggctttattcttcattctttggt-agagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgag 415  Q
    ||||||||||||||| |||||||||| |||||| |||| || |||||| ||||||| | |||| ||||||||  |||||||||||||||    
T  50169547 cactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgag 50169459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 10997326 - 10997201
Alignment:
Q  335 taaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagttt- 433  Q
    |||| ||| ||||||||| |||||| | || || ||||||  |||||||  ||||||||| ||| |||||||| || ||||||| | ||||||||||||     
T  10997326 taagacttcattcttcatgctttgggaaagcttgaagaga--gaaacttatgaaaccaaatgagggaactttaaggctgagtgtatgtggtgagagtttc 10997229  T
Q  434 ---atttcttaggttgggaaacattttt 458  Q
       |||||||||||||||||||||||||    
T  10997228 ttaatttcttaggttgggaaacattttt 10997201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 559
Target Start/End: Original strand, 35109424 - 35109490
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaa 559  Q
    |||||||||||||| |||||||||||||||||| | ||||||| || |||||||| ||||||||||||    
T  35109424 gaaggataaaaaagcttcctttagtattttctcgtaggattca-ttgtgagtgtgtgtgacttgaaaa 35109490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 35109319 - 35109378
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgag 428  Q
    |||||| ||||||||||||||||||| ||| ||||| |||||||  ||||||||||||||    
T  35109319 aagagagagaaacttgagaaaccaaatgagtgaactctagggttcggtgtctttggtgag 35109378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 28265896 - 28265807
Alignment:
Q  335 taaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||| |||||||||| ||||| | ||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||| |||||||    
T  28265896 taaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgagggtctttg 28265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 28223716 - 28223633
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  28223716 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 28223633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 47703704 - 47703756
Alignment:
Q  371 gagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| |||||||||||||  ||||||||  |||||||||||||||||||||||    
T  47703704 gagagagaaacttgagaatacaaaggaggtaactttagggttgagtgtctttg 47703756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 3156739 - 3156802
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  3156739 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 3156802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 8871397 - 8871310
Alignment:
Q  328 cactatttaaggctttattcttcat-tctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttga 414  Q
    ||||||||||||||| ||||||||| | |||||||||| || |||||| ||||||| | || | ||||| ||  ||||||||||||||    
T  8871397 cactatttaaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagggttga 8871310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 28220521 - 28220458
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  28220521 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 28220458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 31659111 - 31659174
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  31659111 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 31659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 44455034 - 44455116
Alignment:
Q  370 agagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    ||||| |||||||||  ||| ||||||||  ||||||||||||||| ||||||| | |||||   |||||| ||||||||||||||    
T  44455034 agagagagaaacttggtaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tttcttgggttgggaaacatt 44455116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 3189204 - 3189258
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  3189204 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 3189258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 3198021 - 3198075
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  3198021 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 3198075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 3206860 - 3206914
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  3206860 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 3206914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 777060 - 777157
Alignment:
Q  328 cactatttaaggctttattcttcattcttt-ggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| || |||||||||| ||| |||| ||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||  |||||||    
T  777060 cactatttaaggattcattcttcatttttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgatggtctttg 777157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 562
Target Start/End: Complemental strand, 22819641 - 22819570
Alignment:
Q  492 gaaggataaaaaagtttcctttagtatttt--ctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    ||||||| |||||| ||||||| || ||||  ||||| ||||||||| | |||||||||||||||||||||||    
T  22819641 gaaggatcaaaaagcttccttttgtgttttttctcttaggattcattga-gagtgtgggtgacttgaaaaatg 22819570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 49918212 - 49918285
Alignment:
Q  359 gtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| || |||||| ||||||||| |||| ||||||||  ||||||||||||||  ||||||| | ||||||    
T  49918212 gtagagcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgattagagtt 49918285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 559
Target Start/End: Original strand, 9022793 - 9022857
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaa 559  Q
    |||||||||||||| |||||| ||  ||||||||| ||||||| || ||||||||| |||||||||||    
T  9022793 gaaggataaaaaagcttccttgag--ttttctcttaggattca-ttgtgagtgtggttgacttgaaaa 9022857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 24202556 - 24202588
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||| ||||||||||||||||||||||||    
T  24202556 caaaggagggaactttagggttgagtgtctttg 24202588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 536
Target Start/End: Complemental strand, 29652023 - 29651979
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatt 536  Q
    ||||||| |||||||||||||| || ||||||||| |||||||||    
T  29652023 gaaggatcaaaaagtttccttttgtgttttctcttaggattcatt 29651979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 330 - 562
Target Start/End: Original strand, 18674130 - 18674357
Alignment:
Q  330 ctatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgaga 429  Q
    ||||||||||||| |||||||||  ||||| | || |||  || | ||||||||  ||||||||||||   ||||||||| |||  ||||||||||||||    
T  18674130 ctatttaaggcttcattcttcatgttttggaaaagctttttgaaagagaaactttggaaaccaaaggaataaactttaggattg--tgtctttggtgaga 18674227  T
Q  430 gtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattatattaattgaaggataaaaaagtttcctttagtattttctctttgg 529  Q
    ||||| ||||| ||||||||||||||   || ||||| | | |   |||||||  |||| ||||||||| |||||| |||||||| | |||||||||  |    
T  18674228 gtttaattcttgggttgggaaacattc--gtaaacaccttgagcagtgagatttcatta-ttgaaggatcaaaaagcttcctttaatgttttctcttatg 18674324  T
Q  530 attcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||||||||||||||||||||||||||||||    
T  18674325 attcatttatgagtgtgggtgacttgaaaaatg 18674357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 562
Target Start/End: Original strand, 28770557 - 28770730
Alignment:
Q  385 agaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattat 484  Q
    ||||||||||||   ||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||  || ||||| | ||||  ||||||       
T  28770557 agaaaccaaagggtggaactttagggttgagtgtctttggtgagtgttt-tttctttggttggaaaacattt--gtaaacaccttgggtagtgagatctc 28770653  T
Q  485 attaattgaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    ||||  |||||||||||||||||||||||||| ||||||||| ||||||| ||  |||||||  ||||||||||||||    
T  28770654 attagctgaaggataaaaaagtttcctttagtgttttctcttaggattca-ttgcgagtgtgtatgacttgaaaaatg 28770730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 488
Target Start/End: Complemental strand, 12633012 - 12632895
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacat 468  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||| || ||||| ||||||  ||||| ||||| |    
T  12633012 aagagagagaaacttgggaaaccaaaggagataactttagggttgagtgtctttaatgagagtttatttattgggttgagaaaca--tttgtaaacacct 12632915  T
Q  469 cgggtgctgagattatatta 488  Q
     ||||| ||||||| |||||    
T  12632914 tgggtgatgagattttatta 12632895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 33162786 - 33162691
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||| ||||| ||| |||||| ||||||||| |||| ||||||||  || |||||||||||| |||||||    
T  33162786 cactatttaaggcttcattcttcattttttagtagaatttcaagagagagaaacttgggaaatcaaaggaggtaattttagggttgagggtctttg 33162691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 36773380 - 36773476
Alignment:
Q  328 cactatttaaggctttattcttcattctttgg-tagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||| ||| |||||||||| ||||  ||||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||| |||||||    
T  36773380 cactatttaagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgagggtctttg 36773476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 2869587 - 2869648
Alignment:
Q  500 aaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| |||| ||||| ||||||||| ||||||||| | |||||||||||||||||||||||    
T  2869587 aaaaagcttccgttagtgttttctcttaggattcattga-gagtgtgggtgacttgaaaaatg 2869648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 39284758 - 39284841
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  39284758 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 39284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 2869464 - 2869515
Alignment:
Q  372 agaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||||| ||  ||||||||| ||||||| |||||||||||||||    
T  2869464 agaaagaaacttgaaaatacaaaggagataactttacggttgagtgtctttg 2869515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 36318304 - 36318241
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  |||||||||||||| |||||||| | ||||||    
T  36318304 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgaatgtctttgattagagtt 36318241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 36988370 - 36988307
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  36988370 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 36988307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 2837917 - 2837986
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||||||||||  |||||||||| ||||||||| ||||||||| | ||  ||||||||| |||||||||    
T  2837917 gaaggataaaaaatattcctttagtgttttctcttaggattcattga-gaaggtgggtgacatgaaaaatg 2837986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 15903781 - 15903846
Alignment:
Q  496 gataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||||||| || |||| || ||||||| | ||||||||| | |||||||||||||||||||||||    
T  15903781 gataaaaaagatttcttttgtgttttctcataggattcattga-gagtgtgggtgacttgaaaaatg 15903846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 41586351 - 41586380
Alignment:
Q  401 aactttagggttgagtgtctttggtgagag 430  Q
    ||||||||||||||||||||||||||||||    
T  41586351 aactttagggttgagtgtctttggtgagag 41586380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 2334712 - 2334629
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| || |||| | |||||   | |||| ||||||||||||||    
T  2334712 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtatttgattagagt---tctcttgggttgggaaacatt 2334629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 34682102 - 34682154
Alignment:
Q  371 gagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| ||||||||| |||  ||||||||  |||||||||||||||||||||||    
T  34682102 gagagagaaacttgggaatacaaaggaggtaactttagggttgagtgtctttg 34682154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 382 - 561
Target Start/End: Complemental strand, 15000 - 14824
Alignment:
Q  382 ttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagat 481  Q
    |||||||||||||  ||| | |||||||||||| |||||||||||||||||||||| || ||||||||||||  ||||| || || |  |||| ||||||    
T  15000 ttgagaaaccaaattagaaatctttagggttgaatgtctttggtgagagtttattttttgggttgggaaaca--tttgtaaatacctttggtggtgagat 14903  T
Q  482 tatattaattgaaggataaaaaagtttcctttagtattttctctttggattca-tttatgagtgtgggtgacttgaaaaat 561  Q
    | ||||| | |||| || |||||   ||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||    
T  14902 tttattattggaagcatcaaaaa--ctcctttagtgttttctcttaggattcactttgtgagtgtgggtgacttgaaaaat 14824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 562
Target Start/End: Original strand, 8863348 - 8863582
Alignment:
Q  322 catgtgcactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctt 421  Q
    |||||||||||| |||||||| |||||||||  |||||  ||| || |||||| | ||||||| |||||||| ||| ||||||||| | |||||||||||    
T  8863348 catgtgcactatataaggcttcattcttcatgttttgggtgagcttcaagagagaaaaacttgggaaaccaatggaaagaactttaagtttgagtgtctt 8863447  T
Q  422 tggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattatattaattgaaggataaaaaagtttcctttagtatttt 521  Q
     ||||| | ||||||||||||| | |||||||   |||| ||||||| || |  |||||||  |||| |   |||||  ||||  |||||||| | ||||    
T  8863448 cggtgaaaatttatttcttaggctaggaaaca--gttgtaaacacattggttagtgagatttcattatt---aggat-taaaatcttcctttaatgtttt 8863541  T
Q  522 ctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| |||||||||||| ||||| |||||||||||||||    
T  8863542 ctctttagattcatttatgtgtgtgagtgacttgaaaaatg 8863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 5689102 - 5689198
Alignment:
Q  328 cactatttaaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||||||| ||| || |||||| ||||||| | |||| ||||||||| ||||||||||||||| |||||||    
T  5689102 cactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggagataactttagggttgagggtctttg 5689198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 456
Target Start/End: Original strand, 31513060 - 31513186
Alignment:
Q  330 ctatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgaga 429  Q
    |||| ||| ||||||||||||||  ||||  |||  || |||| | ||||||||||||||||||| |||| ||  ||||||| ||||||||| | |||||    
T  31513060 ctatctaaagctttattcttcatgttttgagagaacttcaagaaagagaaacttgagaaaccaaatgagaaaatattagggtcgagtgtcttcgatgaga 31513159  T
Q  430 gtttatttcttaggttgggaaacattt 456  Q
    ||||||||||| ||||| |||||||||    
T  31513160 gtttatttcttgggttgagaaacattt 31513186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 430
Target Start/End: Complemental strand, 11712361 - 11712237
Alignment:
Q  307 acgattttctcgagccatgtgcactatttaaggctttattcttcattcttt-ggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactt 405  Q
    |||||||||| | | |||||||||||| ||||| || |||||| ||  ||| ||||||| || |||||| ||||||||  |  | |||| |||  |||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  406 tagggttgagtgtctttggtgagag 430  Q
    |||||||||||||||||||||||||    
T  11712261 tagggttgagtgtctttggtgagag 11712237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 456
Target Start/End: Original strand, 18141652 - 18141777
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtga 427  Q
    ||||||||||||||| |||||||||| ||  |||||| || |||||| ||||||| |  ||| | ||||||  || |||||||||||| ||||||| | |    
T  18141652 cactatttaaggcttcattcttcatttttgagtagagcttcaagagagagaaactaggaaaatcgaaggaggtaattttagggttgagggtctttgatta 18141751  T
Q  428 gagtttatttcttaggttgggaaacattt 456  Q
    | ||   | ||||||||||||||||||||    
T  18141752 gggt---tctcttaggttgggaaacattt 18141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 456
Target Start/End: Complemental strand, 29796618 - 29796534
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacattt 456  Q
    |||||| |||||||||||||| ||||||||  |||||||||||||||  ||||||| ||| ||   | |||| |||||||||||||||    
T  29796618 aagagagagaaacttgagaaatcaaaggaggtaactttagggttgaggatctttggcgagggt---tctcttgggttgggaaacattt 29796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 4731531 - 4731614
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||| ||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  4731531 aagagagagaaacttgaaaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 4731614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 560
Target Start/End: Original strand, 7493060 - 7493127
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaa 560  Q
    ||||||| |||||| |||||||||| |||| |||| ||||| ||| | |||||||||||||||||||||    
T  7493060 gaaggatcaaaaagcttcctttagtgttttttcttaggatttattga-gagtgtgggtgacttgaaaaa 7493127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 30143215 - 30143298
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  30143215 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 30143298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 43036296 - 43036379
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  43036296 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 43036379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 44303727 - 44303810
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||||||| ||||||| | |||||||||||| || ||||||| | |||||   | |||| ||||||||||||||    
T  44303727 aagagagagaaacttgagaaatcaaaggaaacaactttagggtttagggtctttgattagagt---tctcttgggttgggaaacatt 44303810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 423
Target Start/End: Complemental strand, 3051425 - 3051394
Alignment:
Q  392 aaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||||||||||||||||||||    
T  3051425 aaaggagagaactttagggttgagtgtctttg 3051394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 6598854 - 6598928
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    ||||||| |||| ||||||||| ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  6598854 aaacttgggaaatcaaaggagataactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 6598928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 6674307 - 6674381
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    ||||||| |||| ||||||||| ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  6674307 aaacttgggaaatcaaaggagataactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 6674381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 30291424 - 30291519
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| || |||||||||| ||| |||||| || |||| | ||||||| |  ||| ||||||||  ||||||||||||||  |||||||    
T  30291424 cactatttaaggtttcattcttcattttttagtagagcttcaagaaagagaaactaggaaaatcaaaggaggtaactttagggttgatggtctttg 30291519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 5990456 - 5990517
Alignment:
Q  500 aaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| || ||||||| ||||||||| ||||||||| |  ||||||||||||||||||||||    
T  5990456 aaaaagctttctttagtgttttctcttaggattcattgaa-agtgtgggtgacttgaaaaatg 5990517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 42498067 - 42498121
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  42498067 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 42498121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 3232148 - 3232080
Alignment:
Q  328 cactatttaaggctttattcttcattctttg-gtagagttttaagagaaagaaacttgagaaaccaaag 395  Q
    |||||| |||||||| |||||||||  |||| ||||||  |||||||||||||||||| |||| |||||    
T  3232148 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 3232080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 4696399 - 4696431
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||| |||||||||||||||||||||||    
T  4696399 caaaggagataactttagggttgagtgtctttg 4696431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 12702933 - 12702850
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  || |||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  12702933 aagagagagaaacttgggaaatcaaaggaggtaaatttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 12702850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 15212659 - 15212742
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| |||| |||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  15212659 aagagagagaaacttgggaaatcaaatgaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 15212742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 33352023 - 33352106
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||| ||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  33352023 aagagagagaaacttgggaaatcaaagaaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 33352106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 34476945 - 34477041
Alignment:
Q  335 taaggctttattcttca-ttctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagag 430  Q
    |||||||| |||||||| || ||||  || |||| |||||| |||| ||||  |||||||| || |  |||||||||||||| ||||||||||||||    
T  34476945 taaggcttcattcttcaattttttgagagggtttcaagagagagaatcttggtaaaccaaatgaaattactttagggttgagggtctttggtgagag 34477041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 30517898 - 30517978
Alignment:
Q  376 agaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacattt 456  Q
    ||||||||| |||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  30517898 agaaacttgggaaatcaaatgagggaactttagagttgagtgtctttggtgagagtttatttcttagattaggaaacattt 30517978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 1114890 - 1114955
Alignment:
Q  392 aaaggagagaactttagggttgagtgtctttggtgagag-tttatttcttaggttgggaaacattt 456  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| |||||| |||||||||||||||    
T  1114890 aaaggagagaactttatggttgagagtctttggtgagagttttttttctttggttgggaaacattt 1114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 31076699 - 31076759
Alignment:
Q  363 agttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||| |||||||||||||||| |||  ||||||||| |||| ||||||||||||||||||    
T  31076699 agtttgaagagaaagaaacttgggaatacaaaggagataactatagggttgagtgtctttg 31076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 3039251 - 3039157
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||| | ||||  |||| || |||||| | ||||||| ||| | |||||||  ||||||||||||||| |||||||    
T  3039251 cactatttaaggcttcattcttcaatttttgagagagcttcaagagagaaaaacttgggaatc-aaaggaggtaactttagggttgagggtctttg 3039157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 9183326 - 9183263
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  9183326 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 9183263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 26954571 - 26954497
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    ||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||||||||||||||||||    
T  26954571 aaacttgggaaatcaaaggaggtaactttagggttgagagtctttgattagagt---tatcttaggttgggaaacatt 26954497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 562
Target Start/End: Complemental strand, 14521883 - 14521814
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||||||||||  |||||||| | ||||||||| ||||| ||| | ||||||||||||| |||||||||    
T  14521883 gaaggataaaaaatcttcctttaatgttttctcttaggatttattga-gagtgtgggtgacatgaaaaatg 14521814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 33721453 - 33721515
Alignment:
Q  500 aaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| | |||||||| ||||||||| ||||||||||| ||||||| ||||| | |||||||    
T  33721453 aaaaagctccctttagtgttttctcttaggattcatttaggagtgtgtgtgacctaaaaaatg 33721515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 552
Target Start/End: Original strand, 21801231 - 21801291
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgac 552  Q
    ||||||| |||||| ||||||| || ||||||||| || |||||||  |||||||||||||    
T  21801231 gaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgggtgac 21801291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 24435763 - 24435795
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||| |||||||||||||||||||||||    
T  24435763 caaaggagataactttagggttgagtgtctttg 24435795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 41317784 - 41317688
Alignment:
Q  328 cactatttaaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||||||| ||| || |||||| ||||||| | |||| ||||||||  ||||||||||||||| |||||||    
T  41317784 cactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagggttgagggtctttg 41317688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 12098209 - 12098113
Alignment:
Q  328 cactatttaaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||||| | ||| || |||||| | ||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  12098209 cactatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 12098113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 47676431 - 47676348
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||| ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  47676431 aagagagagaaacttgggaaatcaaaggagataactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 47676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 455
Target Start/End: Original strand, 29990921 - 29991011
Alignment:
Q  362 gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||| ||||||||| |||| ||||||||| |||||||||||| || ||||||| | |||||   | |||| ||||||||||||||    
T  29990921 gagtttgaagagagagaaacttgggaaatcaaaggagacaactttagggtttagggtctttgattagagt---tctcttgggttgggaaacatt 29991011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 4253828 - 4253766
Alignment:
Q  366 tttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgag 428  Q
    ||||||||| ||||||||| |||| ||||||||  ||||||||||||||| || |||||||||    
T  4253828 tttaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtatttggtgag 4253766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 423
Target Start/End: Complemental strand, 36146756 - 36146663
Alignment:
Q  331 tatttaaggctttattcttcattcttt-ggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| |||||||||| ||| || |||| || |||||| | ||||||| |||| ||||||||  |||||||| |||||| |||||||    
T  36146756 tatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagtgttgagggtctttg 36146663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 48491452 - 48491535
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||| ||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  48491452 aagagagagaaacttgataaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 48491535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 24526233 - 24526138
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||  |||| |||||||| | ||||  |||| || |||||| | ||||| | |||| ||||||||| ||||||||||||||| |||||||    
T  24526233 cactatttagagcttcattcttcaatttttgcgagagcttcaagagagaaaaactagggaaatcaaaggagataactttagggttgagggtctttg 24526138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 30025027 - 30024964
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  30025027 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 30024964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 3047590 - 3047528
Alignment:
Q  361 agagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| ||||||||| ||||||||| ||   ||||||||  |||||||||||||||||||||||    
T  3047590 agagctttaagagagagaaacttgggattacaaaggaggtaactttagggttgagtgtctttg 3047528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 5817157 - 5817226
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    ||||||| |||||| ||||||| || |||| |||| ||||||||| | ||||||| |||||||||||||||    
T  5817157 gaaggatcaaaaagcttccttttgtgttttttcttaggattcattga-gagtgtgagtgacttgaaaaatg 5817226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 26417198 - 26417252
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||||||||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  26417198 aaacttgagaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 26417252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 27984753 - 27984711
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttggtgagagttt 433  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  27984753 caaaggagagaactttaggactgggtgtctttggtgagagttt 27984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 43864117 - 43864171
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  43864117 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 43864171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 6570476 - 6570521
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||||    
T  6570476 aaacttgagaaatcaaaggaggtaactttaggattgagtgtctttg 6570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 31105679 - 31105634
Alignment:
Q  378 aaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| ||||||||  ||||||||||||||| |||||||    
T  31105679 aaacttgagaaatcaaaggaggtaactttagggttgagggtctttg 31105634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 40808485 - 40808530
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttggtgagagtttatt 436  Q
    ||||||||  ||||||||||||||||||||||||||| || |||||    
T  40808485 caaaggaggtaactttagggttgagtgtctttggtgaaaggttatt 40808530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 1113530 - 1113613
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| |||||||   ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  1113530 aagagagagaaacttgggaaatcaaaggaagtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 1113613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 2647488 - 2647520
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||| |||||||||||||||||||||||    
T  2647488 caaaggagataactttagggttgagtgtctttg 2647520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 4178648 - 4178731
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||||||| |||||||   |||||||||||| || ||||||| | |||||   | |||| ||||||||||||||    
T  4178648 aagagagagaaacttgagaaatcaaaggaagcaactttagggtttagggtctttgattagagt---tctcttgggttgggaaacatt 4178731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 18126524 - 18126580
Alignment:
Q  376 agaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  18126524 agaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 18126580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 19502051 - 19502134
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| | |||||||||||| |||| |||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  19502051 aagagagacaaacttgagaaatcaaatgaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 19502134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 31733264 - 31733181
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||||||| |||| |||  |||||||| |||||| ||||||| | |||||   | |||| ||||||||||||||    
T  31733264 aagagagagaaacttgagaaatcaaaagaggtaactttagagttgagggtctttgattagagt---tctcttgggttgggaaacatt 31733181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 13696002 - 13695940
Alignment:
Q  366 tttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgag 428  Q
    ||||||||| |||||||||||||| ||||| ||| | ||||||||||||||||||||||||||    
T  13696002 tttaagagagagaaacttgagaaatcaaagaagatagctttagggttgagtgtctttggtgag 13695940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 562
Target Start/End: Complemental strand, 2630440 - 2630372
Alignment:
Q  493 aaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||  |||||| |||||||||||||||||    
T  2630440 aaggatcaaaaagcttcctttagtgttttctcttaggattcattg-tgagtgagggtgacttgaaaaatg 2630372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 9049650 - 9049596
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||  |||||||    
T  9049650 aagagagagaaacttgagaaatcaaaggagataactttagggttgaaagtctttg 9049596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 5611524 - 5611416
Alignment:
Q  310 attttctcgagccatgtgcactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagg 409  Q
    ||||||||||| | ||| ||  ||||||| ||| |||||||||  ||||  |||| || |||||| ||||||||| ||||| || |||| |||||||||     
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttgaaagagcttcaagagagagaaacttgtgaaactaatggagggaactttaga 5611425  T
Q  410 gttgagtgt 418  Q
    |||||||||    
T  5611424 gttgagtgt 5611416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 10282080 - 10282028
Alignment:
Q  371 gagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||| |||||||||||||  ||||||||  |||||||||||||||||||||||    
T  10282080 gagagagaaacttgagaatacaaaggaggtaactttagggttgagtgtctttg 10282028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 28750950 - 28750867
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  28750950 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 28750867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 559
Target Start/End: Original strand, 11181719 - 11181785
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaa 559  Q
    ||||||| |||||| ||||||| || ||||||||| |||||||||  |||||||||||||| ||||||    
T  11181719 gaaggatcaaaaagcttccttttgtgttttctcttaggattcattg-tgagtgtgggtgacatgaaaa 11181785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 13488076 - 13488139
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  13488076 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 13488139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 42428725 - 42428662
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||| ||||||||||||||  ||||||| | ||||||    
T  42428725 aagagagagaaacttgggaaatcaaaggagataactttagggttgaaggtctttgattagagtt 42428662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 5007385 - 5007483
Alignment:
Q  331 tatttaaggctttattcttcattcttt-ggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgag 428  Q
    |||||||||||| ||| |||||| ||  ||||| | ||||||||| | ||||||   ||| ||||||||  |||||||||||||||| |||||||||||    
T  5007385 tatttaaggcttcattgttcatttttaaggtagggctttaagagagaaaaacttagaaaatcaaaggaggtaactttagggttgagtatctttggtgag 5007483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 32636698 - 32636760
Alignment:
Q  370 agagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    ||||| |||||||||||||| ||||||||  |||||||||||| || ||||||| | ||||||    
T  32636698 agagagagaaacttgagaaatcaaaggaggtaactttagggttaagggtctttgattagagtt 32636760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 39468844 - 39468791
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtcttt 422  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||    
T  39468844 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtcttt 39468791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 42426523 - 42426447
Alignment:
Q  376 agaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||||| ||||||||||||    
T  42426523 agaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttagattgggaaacatt 42426447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 102260 - 102450
Alignment:
Q  369 aagagaaagaaactt-gagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacaca 467  Q
    |||||| |||||||| | ||||||||||||  ||||||||| ||||||||| |||||||||| |||||||||  |||||| |||||  ||||  |||||     
T  102260 aagagagagaaactttgggaaaccaaaggaaggaactttagtgttgagtgt-tttggtgagattttatttctagggttggaaaaca--tttgaaaacacc 102356  T
Q  468 tcgggtgctgagattatattaattgaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    | ||    | ||||| |||||   ||||||| ||||||  ||||||||| ||||||||| | ||| | ||||||||||| |||||||||||||||    
T  102357 ttggtaagtaagattttattagaggaaggatcaaaaagcatcctttagtgttttctcttcgaattta-ttatgagtgtgtgtgacttgaaaaatg 102450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 114463 - 114517
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| |||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  114463 aagagagagaaacttgagaaatcaaaggaggtaactttagggttgagggtctttg 114517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 873286 - 873371
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacattt 456  Q
    |||||| ||||||||| ||| |||||| || |||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||||    
T  873286 aagagatagaaacttgggaa-ccaaagaagggaactttagggttgagtgtctttggtgataattt-tttcttgggttggggaacattt 873371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 12739845 - 12739762
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||||||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  12739845 aagagagagaaacttgagaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 12739762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 12748051 - 12747968
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| |||||||||||||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  12748051 aagagagagaaacttgagaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 12747968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 46147692 - 46147596
Alignment:
Q  328 cactatttaaggctttattcttcattctttggta-gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| || |||||||| | ||||||| ||| || |||||| | ||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  46147692 cactatttaaggtttcattcttcaatttttggtaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 46147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 8114536 - 8114623
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacattt 456  Q
    |||||| ||||||||   ||| |||||||| ||||||||| |||||| ||||| ||||||||||| |||  | |||||||||||||||    
T  8114536 aagagatagaaactttgaaaatcaaaggagggaactttagagttgagagtcttgggtgagagttttttttcttggttgggaaacattt 8114623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 562
Target Start/End: Complemental strand, 37782160 - 37782003
Alignment:
Q  401 aactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtgctgagattatattaattgaaggataa 500  Q
    |||||||| ||||| | |||||||||||||  | |  ||| |||||| ||||||||  || ||||| | ||||  |||||||  |||| | |||| || |    
T  37782160 aactttagagttgaatatctttggtgagaggctct--cttgggttggaaaacattt--gtaaacaccttgggtagtgagatttcattattggaagaatca 37782065  T
Q  501 aaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||| || |||||| |||||||||  |||||||||| |||||| ||||||||||||||||    
T  37782064 aaaagtctcttttagtgttttctcttaagattcatttacgagtgtaggtgacttgaaaaatg 37782003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 5370381 - 5370327
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| |||||||||||||| ||||||||| |||||||||||| || |||||||    
T  5370381 aagagagagaaacttgagaaatcaaaggagacaactttagggtttagggtctttg 5370327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 562
Target Start/End: Original strand, 34670552 - 34670621
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaatg 562  Q
    |||||||  |||||||| ||||||| ||||||||| |||||||||  |||||||| |||||||||||||||    
T  34670552 gaaggatctaaaagttttctttagtgttttctcttaggattcattg-tgagtgtgagtgacttgaaaaatg 34670621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 560
Target Start/End: Original strand, 1983188 - 1983255
Alignment:
Q  492 gaaggataaaaaagtttcctttagtattttctctttggattcatttatgagtgtgggtgacttgaaaaa 560  Q
    |||||||||||||| ||||||| |  ||||||||| ||||||||| | |||||| ||||||||||||||    
T  1983188 gaaggataaaaaagcttccttttgggttttctcttaggattcattga-gagtgtaggtgacttgaaaaa 1983255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 21704172 - 21704064
Alignment:
Q  322 catgtgcactatttaaggctttattcttcattctttg-gtagagtttt-aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtc 419  Q
    ||||||||||||||||| ||| ||| |||||  |||| ||||||  || |||||| |||||||||||||| |||| |||  ||||||| ||||||  |||    
T  21704172 catgtgcactatttaagacttcatttttcatgttttgtgtagaggcttcaagagagagaaacttgagaaatcaaatgaggtaactttaaggttgaaagtc 21704073  T
Q  420 tttggtgag 428  Q
    |||||||||    
T  21704072 tttggtgag 21704064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 423
Target Start/End: Complemental strand, 36463735 - 36463643
Alignment:
Q  331 tatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||||||| |||||||||| ||  |||||| || |||||| | ||||||| |||| || |||||  ||||||||| ||||| |||||||    
T  36463735 tatttaaggcttcattcttcatttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttaggattgagggtctttg 36463643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 37755227 - 37755159
Alignment:
Q  362 gagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagag 430  Q
    |||||| |||||| |||||||||  ||| ||||||||  ||||||||| ||||| ||||||||||||||    
T  37755227 gagtttcaagagagagaaacttggaaaatcaaaggaggtaactttaggattgagagtctttggtgagag 37755159  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 48142915 - 48142998
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  48142915 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 48142998  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 52082952 - 52082869
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  52082952 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 52082869  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 30000100 - 30000037
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||| |||||||||||| || ||||||| | ||||||    
T  30000100 aagagagagaaacttgggaaatcaaaggagacaactttagggtttagggtctttgattagagtt 30000037  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 52093959 - 52093896
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtt 432  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| ||||||| | ||||||    
T  52093959 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagagtt 52093896  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 52467691 - 52467596
Alignment:
Q  328 cactatttaaggctttattcttcattctttggtagagttttaagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||||||||||||| |||||||||| ||  || ||| || |||||| ||||||| | | || ||||||||  || |||||||||||| |||||||    
T  52467691 cactatttaaggcttcattcttcatttttgagtggagcttcaagagagagaaactagggtaatcaaaggaggtaattttagggttgagggtctttg 52467596  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 9927752 - 9927698
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| |||||||    
T  9927752 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttg 9927698  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 21548643 - 21548697
Alignment:
Q  369 aagagaaagaaacttgagaaacc-aaaggagagaactttagggttgagtgtcttt 422  Q
    |||||| |||| ||||||||| | ||||||||||||||||||||| |||||||||    
T  21548643 aagagagagaatcttgagaaatctaaaggagagaactttagggttaagtgtcttt 21548697  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 29254368 - 29254421
Alignment:
Q  370 agagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttg 423  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||  |||||||    
T  29254368 agagagagaaacttgggaaatcaaaggagataactttagggttgaaggtctttg 29254421  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 5429552 - 5429635
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| |||||||   ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  5429552 aagagagagaaacttgggaaatcaaaggaagtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 5429635  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 37740499 - 37740582
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  || |||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  37740499 aagagagagaaacttgggaaatcaaaggaggtaagtttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 37740582  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 52095657 - 52095574
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||| | ||||| | |||||   | |||| ||||||||||||||    
T  52095657 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggactttgattagagt---tctcttgggttgggaaacatt 52095574  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 54200201 - 54200118
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||  |||| ||||||||  ||||||||||||||| ||||||| | |||||   | |||| ||||||||||||||    
T  54200201 aagagagagaaacttaggaaatcaaaggaggtaactttagggttgagggtctttgattagagt---tctcttgggttgggaaacatt 54200118  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 56178931 - 56178848
Alignment:
Q  369 aagagaaagaaacttgagaaaccaaaggagagaactttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatt 455  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||||  ||||||| | |||||   | |||| ||||||||||||||    
T  56178931 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgattagagt---tctcttgggttgggaaacatt 56178848  T

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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 8208 - 8240
Alignment:
Q  391 caaaggagagaactttagggttgagtgtctttg 423  Q
    |||||||| ||||||||||||||||||||||||    
T  8208 caaaggagggaactttagggttgagtgtctttg 8240  T

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