View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6507_low_9 (Length: 535)
Name: NF6507_low_9
Description: NF6507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6507_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 221 - 484
Target Start/End: Complemental strand, 38771996 - 38771733
Alignment:
| Q |
221 |
ctgaatttttaataaaaggggtgaaaagtgaaaatttgatccatgaagaggnnnnnnnnctaaccacttcgagtgcacgttttctctttaacttcattgg |
320 |
Q |
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| T |
38771996 |
ctgaatttttaataaaaggggtgaaaagtgaaaatttgatccatgaagaggaaaaaaaactaaccacttcgagtgcacgttttctctttaacttcattgg |
38771897 |
T |
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| Q |
321 |
ggaagtgagagcatagcaggaatcagaggaaataattgagaaagttgatcaattcccaaaacctaaaatcgagaattgatcgctcaattcaatcaaattg |
420 |
Q |
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| T |
38771896 |
ggaagtgagagcatagcaggaatcagaggaaataattgagaaagttgatcaattcccaaaacctaaaatcgagaattgatcgctcaattcaatcaaattg |
38771797 |
T |
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| Q |
421 |
atagaaggaataatcagagtttttgaggagaatgagaggattggtttatcgatggagtgaaggt |
484 |
Q |
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| T |
38771796 |
atagaaggaataatcagagtttttgaggagaatgagaggattggtttatcgatggagtgaaggt |
38771733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 38772196 - 38772063
Alignment:
| Q |
21 |
gcatgatcacaacaattagcaaattgatcactgtattacaacttaattaacaaagaaaatcactctccacaacaataacaacttaattaatgatgaaaat |
120 |
Q |
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| T |
38772196 |
gcatgatcacaacaattagcaaattgatcactgtattacaacttaattaacaatgaaaatcactctccacaacaattacaacttaattaatgatgaaaat |
38772097 |
T |
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| Q |
121 |
cactctccgcaacaattgaaacttcattaacaat |
154 |
Q |
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| T |
38772096 |
cactctccgcaacaattaaaacttcattaacaat |
38772063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 223 - 474
Target Start/End: Complemental strand, 38793334 - 38793089
Alignment:
| Q |
223 |
gaatttttaataaaaggggtgaaaagtgaaaatttgatccatgaagaggnnnnnnnnctaaccacttcgagtgcacgttttctctttaacttcattgggg |
322 |
Q |
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||||||| ||||||| |||| |||| ||||||||||||| ||||||| | |||||||||||||| || || |||| ||||||||||||||| | |
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| T |
38793334 |
gaattttgaataaaacgggtaaaaattgaaaatttgatcgatgaagaagagaaaaa-ctaaccacttcgagagcgcgctttcgctttaacttcattggag |
38793236 |
T |
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| Q |
323 |
aagtgagagcatagcaggaatcagaggaaataattgagaaag---ttgatcaattcccaaaacctaaaatcgagaattgatcgctcaattcaatcaaatt |
419 |
Q |
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| T |
38793235 |
aagtgagcgcatagcaggaatcag-------gattgagagagtttttgatcaattcccagaaggtataatcgagaattgatc-----cttcgatcaaatt |
38793148 |
T |
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| Q |
420 |
gata----gaaggaataatcagagtttttgaggagaatgagaggattggtttatcgatg |
474 |
Q |
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| T |
38793147 |
gatagaaggaaggaataatcaaagtttcggaagagaatgagaagattggtttatcgatg |
38793089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 38793458 - 38793397
Alignment:
| Q |
21 |
gcatgatcacaacaattagcaaattgatcactgtattacaacttaattaacaaagaaaatcac |
83 |
Q |
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| T |
38793458 |
gcatgatcacaccaattggcaa-ttgatcactatattacaacttaattaacaatgaaaatcac |
38793397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 38772122 - 38772049
Alignment:
| Q |
55 |
attacaacttaattaacaaagaaaatcactctccacaacaataacaacttaattaatgatgaaaatcactctcc |
128 |
Q |
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|||||||||||||||| | |||||||||||||| ||||||| | ||||| ||||| |||||||||||||||| |
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| T |
38772122 |
attacaacttaattaatgatgaaaatcactctccgcaacaattaaaacttcattaacaatgaaaatcactctcc |
38772049 |
T |
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