View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6508_low_1 (Length: 442)
Name: NF6508_low_1
Description: NF6508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6508_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 42780040 - 42779751
Alignment:
| Q |
1 |
cctagctatcgtcgttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggttccgttat |
100 |
Q |
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| T |
42780040 |
cctagctatcgtcgttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggttccgttat |
42779941 |
T |
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| Q |
101 |
tgagttctcaaaacatttgggaatataattgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgcn |
200 |
Q |
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| T |
42779940 |
tgagttctcaaaacatttgggaatataattgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgct |
42779841 |
T |
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| Q |
201 |
nnnnnnngctagcaatatgtggtctattcttttgaatttgtgctgctgcgtttttgcgtctctatgggtgccatttttggtggtggtaca |
290 |
Q |
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| T |
42779840 |
tttttttgctagcaatatgtggtctattcttttgaatttgtgctgctgcgtttttgcgtctctattggtgccatttttggtggtggtaca |
42779751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 42779693 - 42779615
Alignment:
| Q |
348 |
gctacgaagtacttgttcctagcatctagttacgttgattttgatttagttgttgtcattgctttcatttagtctgtat |
426 |
Q |
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| T |
42779693 |
gctacgaagtacttgttcctagcatctagttacgttgattttgatttagttgttgtcattgctttcatttagtctgtat |
42779615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 29554641 - 29554903
Alignment:
| Q |
15 |
ttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggtt------ccgttattgagttct |
108 |
Q |
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| T |
29554641 |
ttgttttgttattgtctctgaaacctagattgttaacatggtatcaaaagctttgttcgatccaccttgaactacggtttcacttccattattgagttcc |
29554740 |
T |
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| Q |
109 |
caaaacatttgggaatataattgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgcnnnnnnnn- |
207 |
Q |
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| T |
29554741 |
taaaattttttagaataca------ttgttttttggatgattggttaaaatttgcggtttttgttctgttgaagaaaatttaatctgttgcttttgttca |
29554834 |
T |
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| Q |
208 |
gctagcaatatgtggtctattcttttgaatttgtgctgctgcgtttttgcgtctctatgggtgccatttt |
277 |
Q |
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| T |
29554835 |
gttagcaatatgtggtctattcttttgaatttgtgctgctgag-ttttgcgtcactattggtgccatttt |
29554903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 29554977 - 29555017
Alignment:
| Q |
351 |
acgaagtacttgttcctagcatctagttacgttgattttga |
391 |
Q |
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| T |
29554977 |
acgaagtacttgttcctggcatctagttatgttgattttga |
29555017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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