View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_high_11 (Length: 225)
Name: NF6509_high_11
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_high_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 36525432 - 36525657
Alignment:
| Q |
1 |
caaacttaagaagccacgagcctcaaaaaatgttggaagtaagagactgagacaaccaaaagagagattgaacaatggaagataatggcatgttaggcta |
100 |
Q |
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| T |
36525432 |
caaacttaagaagccacgagcctcaaaaaatgttggaagtaagagactgagacaaccaaaagagagattgaacaatagaagataatggcatgttaggcta |
36525531 |
T |
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| Q |
101 |
atga-gggtaagaaaaccagttctaaaaagtggaggaaaacagaattcctcaagnnnnnnnnatttaatccattacttaatgatgatctttttcttcctg |
199 |
Q |
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| T |
36525532 |
atgaggggtaagaaaaccagttctaaaaagtggaggaaaacagaattcctcaagttttttttatttaatccattacttaatgatgatctttttcttcctg |
36525631 |
T |
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| Q |
200 |
cacaacctgtgtaaaatagaacatat |
225 |
Q |
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| T |
36525632 |
cacaacctgtgtaaaatagaacatat |
36525657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 26304391 - 26304319
Alignment:
| Q |
84 |
aatggcatgttag-gctaatgaggg-taagaaaaccagt--tctaaaaagtggaggaaaacagaattcctcaa |
152 |
Q |
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||||||||||||| ||| ||||||| |||||| |||||| |||||||| ||||||||||||||||||||||| |
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| T |
26304391 |
aatggcatgttagagcttatgaggggtaagaacaccagtattctaaaaactggaggaaaacagaattcctcaa |
26304319 |
T |
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