View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6509_low_1 (Length: 673)
Name: NF6509_low_1
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 197 - 635
Target Start/End: Complemental strand, 1695214 - 1694778
Alignment:
| Q |
197 |
gattacctaattattaatgttaaccattcatattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnng |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1695214 |
gattacctaattattaatgtaaaccattcttattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgctttttttg |
1695115 |
T |
|
| Q |
297 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1695114 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
1695015 |
T |
|
| Q |
397 |
ttctcctcttactatcatggtaagtaaagtctattccattaat------ttcagatcatatgaagattatactgtattttctctaaacttgttacatatg |
490 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1695014 |
ttctcctcttacgatcatggtaagtaacttctattccattaattttatattcagatcatatgaagattatactgtattttctctaaacttgttac----- |
1694920 |
T |
|
| Q |
491 |
aatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1694919 |
---atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
1694823 |
T |
|
| Q |
591 |
acatatgctctgctccacccctttgacatttatgttctggtaatt |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1694822 |
acatatgctctgctccacccctttgacatttatgttctggtaatt |
1694778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 301 - 635
Target Start/End: Complemental strand, 1684687 - 1684343
Alignment:
| Q |
301 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttct |
400 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
1684687 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
1684588 |
T |
|
| Q |
401 |
cctcttactatcatggtaagtaaagtctattccattaatttcagatc---atatgaagattatactgtat------------tttctctaaacttgttac |
485 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||| || | || ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1684587 |
cctcttacaatcatggtaagtaacttctattccaataactttatattcagatatgaa--ttatactgtatcttataaagtattttctctaaacttgttac |
1684490 |
T |
|
| Q |
486 |
atatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgct |
585 |
Q |
| |
|
|||||| |||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1684489 |
atatga---tatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgct |
1684393 |
T |
|
| Q |
586 |
ggacaacatatgctctgctccacccctttgacatttatgttctggtaatt |
635 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
1684392 |
ggacaacatatgctctgctccatccctttgacctttatgttctggtaatt |
1684343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 1695393 - 1695248
Alignment:
| Q |
18 |
ctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1695393 |
ctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatc |
1695294 |
T |
|
| Q |
118 |
tacgccaacaagaaaggaagggtacgtatgctttcacactataagc |
163 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1695293 |
tatgccaacaagaaaggaagggtacgtatgctttcacactataagc |
1695248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 1971545 - 1971405
Alignment:
| Q |
19 |
tatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
1971545 |
tatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcaagtttgtctatcttaccatcttttttatct |
1971446 |
T |
|
| Q |
119 |
acgccaacaagaaaggaagggtacgtatgctttcacactat |
159 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1971445 |
atgccaacaagaaaggaagggtacgtatgctttcacactat |
1971405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 1685066 - 1684925
Alignment:
| Q |
18 |
ctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
1685066 |
ctatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcatgattgtctatcttaccatctattttatc |
1684967 |
T |
|
| Q |
118 |
tacgccaacaagaaaggaagggtacgtatgctttcacactat |
159 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1684966 |
tatgccaacaagaaaggaagggtatgtatgctttcacactat |
1684925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 493 - 641
Target Start/End: Complemental strand, 1700012 - 1699864
Alignment:
| Q |
493 |
tatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaac |
592 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
1700012 |
tatataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaac |
1699913 |
T |
|
| Q |
593 |
atatgctctgctccacccctttgacatttatgttctggtaattcattta |
641 |
Q |
| |
|
||||||||| ||||||| || || |||||||| |||||||| ||||| |
|
|
| T |
1699912 |
atatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 1700837 - 1700732
Alignment:
| Q |
19 |
tatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttttatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || || |||||||| |||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
1700837 |
tatggaatgccttttgtgcacccaaacagcactttagttctctctatcaatagtgttggaattctctttgaggttgtctatcttaccatcttttttatct |
1700738 |
T |
|
| Q |
119 |
acgcca |
124 |
Q |
| |
|
| |||| |
|
|
| T |
1700737 |
atgcca |
1700732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 245 - 421
Target Start/End: Complemental strand, 1700272 - 1700096
Alignment:
| Q |
245 |
taatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnngctatcattgttctgataacaatgttggcattacatggcactaccaaga |
344 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | |||||||||| || | |
|
|
| T |
1700272 |
taatttcagaaaaagttgctgctttatcttctcatcgaggctattttctttgctgtcattgttctaataacaatgttggcacttcatggcactaaaaaaa |
1700173 |
T |
|
| Q |
345 |
ggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagt |
421 |
Q |
| |
|
| || ||||||||||| || | |||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1700172 |
gatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaatcatggtaagt |
1700096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 494 - 635
Target Start/End: Complemental strand, 1674322 - 1674181
Alignment:
| Q |
494 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaaca |
593 |
Q |
| |
|
|||| ||||||||| || ||||||| ||| ||||||||||||||||||||||||| || |||||| | | ||| || |||||| | || ||||||||| |
|
|
| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaaca |
1674223 |
T |
|
| Q |
594 |
tatgctctgctccacccctttgacatttatgttctggtaatt |
635 |
Q |
| |
|
|||||||| || ||||||| ||||||||| | ||||||||| |
|
|
| T |
1674222 |
tatgctctcatcaaccccttcgacatttatctcctggtaatt |
1674181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 1971087 - 1971015
Alignment:
| Q |
364 |
tatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagtaaagtctattccatt |
436 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
1971087 |
tatttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaacttctattccatt |
1971015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University