View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_low_2 (Length: 577)
Name: NF6509_low_2
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 125 - 556
Target Start/End: Complemental strand, 26596784 - 26596354
Alignment:
| Q |
125 |
cttgaagttggtttaggtggagaatttgcaggaggatagattgtaattatttcttgtatgtgtcgctattgattcatcgatgtgattgtttagaatttct |
224 |
Q |
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| T |
26596784 |
cttgaagttggtttaggtggagaatttgcaggaggatagattgtaattgtttcttgtatgtgtcgctattgattcatcgatgtgattgtttagaatttct |
26596685 |
T |
|
| Q |
225 |
cttacactccttttattaaaattattttgcttatataaaaacaaaataagataatttttagttcttgacaaaaataaattgagacattttaatctacata |
324 |
Q |
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| T |
26596684 |
cttacactccttttattaaaattattttgcttatataaaaacaaaataagataatttttagttcttgacaaaaataaattgagacattttaatctacata |
26596585 |
T |
|
| Q |
325 |
aaaatgtatttgttgagttgaggtgtgtgtccactaggattgattttacaaaatggattaattctccaatgatttccgctctactattagtgatccttaa |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26596584 |
aaaatgtatttgttgagttgaggtgtgtgtccactaggattgattttac-aaatggattaattctccaatgatttctgctctactattagtgatccttaa |
26596486 |
T |
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| Q |
425 |
ggctttcacatgcaaagttgggtcatattttgctctttggtaaccaaactatgaacataccatgttttttcctcgtgcaatgattaacgacgcacataac |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26596485 |
ggctttcacatgcaaagttgggtcatattttgctctttggtaaccaaactatgaacataccatgttttttcctcgtgcaatgattaacgatgcacataac |
26596386 |
T |
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| Q |
525 |
ttttgtctagggatgttacattggagcagtgc |
556 |
Q |
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| T |
26596385 |
ttttgtctagggatgttacattggagcagtgc |
26596354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 26596919 - 26596812
Alignment:
| Q |
13 |
aatatgggagacaaaatctcattctcatccctaagaaaatatcttgaatttagcatggcttggcacaaaataaatgtgtctttgtggggtaaggtttcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26596919 |
aatatgggagacaaaatctcattctcatccctaagaaaatatcttgaatttagcttggcttggcacaaaataaatgtgtctttgtggggtaaggtttcta |
26596820 |
T |
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| Q |
113 |
atactaat |
120 |
Q |
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|||||||| |
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| T |
26596819 |
atactaat |
26596812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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