View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6509_low_3 (Length: 542)
Name: NF6509_low_3
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 14340842 - 14341359
Alignment:
| Q |
18 |
ctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340842 |
ctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
14340941 |
T |
|
| Q |
118 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340942 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatg |
14341041 |
T |
|
| Q |
218 |
caaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341042 |
caaggagccaaggtaattatgttcaattaagtttttgttatctttaaatgatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
14341141 |
T |
|
| Q |
318 |
atgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatgga |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14341142 |
atgatttgtggcaggttttatgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatgga |
14341241 |
T |
|
| Q |
415 |
acattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaattc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14341242 |
acattttatggctttgcatgtgatgacccctctacatatatcagttgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaattc |
14341341 |
T |
|
| Q |
515 |
tctctggttccttctctg |
532 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
14341342 |
tctctggttccttctctg |
14341359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 3601962 - 3602400
Alignment:
| Q |
18 |
ctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3601962 |
ctattattacttcttttatccacacaagaacgagaagggtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
3602061 |
T |
|
| Q |
118 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3602062 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacggtcaaatatacacttatcagcaatg |
3602161 |
T |
|
| Q |
218 |
caaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
317 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3602162 |
caaggaaccaaggta---atgttcaattaagtttttgttatctttaaaatatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
3602258 |
T |
|
| Q |
318 |
atgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatgga |
414 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3602259 |
atgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatgga |
3602358 |
T |
|
| Q |
415 |
acattttatggctttgcatgtgatgacccctctacatatatc |
456 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||||||||||| |
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|
| T |
3602359 |
acagtttatggcattgcatgtgatgattcctctacatatatc |
3602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 3591052 - 3591225
Alignment:
| Q |
50 |
agaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggag |
149 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
3591052 |
agaagggtaacttagatgccaatggctgtgttaaacctcacaataagcttgctcaagaatataactggtagctaaaagaccaagtgtttcagctaaggag |
3591151 |
T |
|
| Q |
150 |
aatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaagga |
223 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
3591152 |
aaagtttccattagccaaatttacatatgttgatgtttacacagtaaaatataaacttatcagcaacgcaagga |
3591225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 3568998 - 3569173
Alignment:
| Q |
58 |
aacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttc |
157 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||| |
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|
| T |
3568998 |
aacttggatgccaatggttgttttaaacctcacaacgagcttgctcaggaatagaacaggcagctaaaagac-aagcgtttcagctaaggagaaagtttc |
3569096 |
T |
|
| Q |
158 |
cattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggtaat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| |||||| |
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|
| T |
3569097 |
cattagccaaatttacatatgttgatgtttacacagtaaaatagaaacttatcagcaacgcaaggagccagggtaat |
3569173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 3569487 - 3569570
Alignment:
| Q |
286 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
369 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |||| || | ||||||||||||||||| |||||||||||| |
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|
| T |
3569487 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttac |
3569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 3577213 - 3577296
Alignment:
| Q |
286 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
369 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||| |
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|
| T |
3577213 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttac |
3577296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 3602399 - 3602453
Alignment:
| Q |
478 |
tcccaagcagcaaatgaatggattgttaaacaaattctctctggttccttctctg |
532 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3602399 |
tcccaagcagcaaaggaatggattgctaaacaaattctctatggttccttctctg |
3602453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 3591554 - 3591637
Alignment:
| Q |
286 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
369 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||| || ||||||| |||| |
|
|
| T |
3591554 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
3591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 1409397 - 1409581
Alignment:
| Q |
50 |
agaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggag |
149 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
1409397 |
agaagggtaacttggatgtctatggctgtgttatacctcacaatgagcttgctcaagaatataacaggcagctaaaagacaaagtgtttcagctaaggcg |
1409496 |
T |
|
| Q |
150 |
aatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggtaat |
234 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
1409497 |
aaagtttccattagccaagtttacatatgttgatgtgtacacagccaaatataaacttattagcaatgcaaagagccaaggtaat |
1409581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 286 - 532
Target Start/End: Original strand, 1409817 - 1410059
Alignment:
| Q |
286 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatac |
385 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| || | ||| |
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|
| T |
1409817 |
gtgcacaattaggttttaactctcatgcttg----atttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataa |
1409912 |
T |
|
| Q |
386 |
attattgtgggaagtccataaaaaatggaacattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagc |
485 |
Q |
| |
|
||| | | |||| |||||| |||||||||| |||||||| | |||||||| | || |||| | |||| || |||||||||||||||||||| ||||| |
|
|
| T |
1409913 |
attgtgggttgaaggccataataaatggaacagtttatggcaatccatgtgataatccttctaaacatattagttgggatggtatacactactctcaagc |
1410012 |
T |
|
| Q |
486 |
agcaaatgaatggattgttaaacaaattctctctggttccttctctg |
532 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
1410013 |
tgcaaatcaatgggttgctaaacaaattctctatggttccttctctg |
1410059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 1412443 - 1412624
Alignment:
| Q |
50 |
agaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggag |
149 |
Q |
| |
|
||||| ||||| | || |||||||||||||| |||||||| ||| | | ||||| |||| ||||| | ||||||| |||||||||| | | |||||||| |
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|
| T |
1412443 |
agaagggtaacctagacgccaatggctgtgtgaaacctcagaacaaaatagctcaagaatttaacaagaagctaaaggaccaagtgtcttatctaaggag |
1412542 |
T |
|
| Q |
150 |
aatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
231 |
Q |
| |
|
|| | | | ||||||||||||||||||||| | |||| || ||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
1412543 |
aaaactcctacaggccaaatttacatatgttgatatgtacaaagccaaatatgaactaatcagcaatgcaaggagccgaggt |
1412624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 1417191 - 1417259
Alignment:
| Q |
163 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
231 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
1417191 |
gccaaatttacatatgttgatatgtacaaagccaaacatgaactaatcagcaatgcaaagagccaaggt |
1417259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 1421679 - 1421747
Alignment:
| Q |
163 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
231 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1421679 |
gccaaatttacatatgttgatatgtacaaagctaaatatgaactaatcagcaatgcaaagagccaaggt |
1421747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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