View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_low_4 (Length: 480)
Name: NF6509_low_4
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 47167840 - 47168287
Alignment:
| Q |
12 |
tgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgacttcttcaatggcggcgatccctatgatcctga |
111 |
Q |
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| T |
47167840 |
tgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgatttcttcaatggcg---atccctatgatcctga |
47167936 |
T |
|
| Q |
112 |
gaatgttgacagacctatacttgttcggagtaaagactatcaaccagttagtactttataatgatagttattgcttcaattttttatatggaacttcgat |
211 |
Q |
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| T |
47167937 |
gaatgttgacagacctatacttgttcggagtaaagaccatcaaccagttagtactttataatgatagttattgcttcaattttttatatggaacttcgat |
47168036 |
T |
|
| Q |
212 |
aactctgatcttagattatgattaagagttattgtgtaaagttattggaaaatcaaaactcattcaagcttctgtgttagcacatccatcatctatcaca |
311 |
Q |
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| T |
47168037 |
aactctgagcttagattatgattaagagttattgtgtaaagttattggaaaatcaaaactcattcaagcttctgtgttagcacatccatcatctatcaca |
47168136 |
T |
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| Q |
312 |
gtagtctggttctaaacatttagttgaacttctattgttctctatttgcgagatacattaaatacattagaaatgcttgtacttttgtattttgatgagt |
411 |
Q |
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| T |
47168137 |
gtagtctggttctaaacatttagttgaacttctattgttctctatttgcgagatacattaaatacattagaaatgcttgtacttttgtattttgatgagt |
47168236 |
T |
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| Q |
412 |
aatgtcattgattgaatttgctaatagaatactaaattgattgactgactc |
462 |
Q |
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| T |
47168237 |
aatgtcattgattgaattctctaatagaagactaaattgattgactgactc |
47168287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 48714619 - 48714774
Alignment:
| Q |
19 |
tttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgacttcttcaatggcggcgatccctatgatcctgagaatgtt |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
48714619 |
tttgtgaaggatgtttgccgacaaggttgcagcaaccgggtattatgtggtggttcccgacttcttcaa---cggagatccctatgatcctcggaatgtt |
48714715 |
T |
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| Q |
119 |
gacagacctatacttgttcggagtaaagactatcaaccagttagtac-tttataatgat |
176 |
Q |
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| T |
48714716 |
gacagacctatagatgtttgggtgaaagaccatctgccagttagtacttttataatgat |
48714774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 48715213 - 48715272
Alignment:
| Q |
256 |
ttggaaaatcaaaactcattcaagcttctgtgttagcacatccatcatctatcacagtag |
315 |
Q |
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|||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
48715213 |
ttgggaaatccaaactcattcaagctgctgtgttagcacatccatcatacatcacagtag |
48715272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 48696734 - 48696812
Alignment:
| Q |
12 |
tgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgacttcttcaatgg |
90 |
Q |
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|||||||||||||||||| |||| ||||||||||| ||| | || ||||||||||| |||||||||| |||| |||| |
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| T |
48696734 |
tgatctgtttgtgaaggaatcttgccgacaaggttgcggcagcaggttattatgtggtagttcctgactacttctatgg |
48696812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 48702787 - 48702846
Alignment:
| Q |
256 |
ttggaaaatcaaaactcattcaagcttctgtgttagcacatccatcatctatcacagtag |
315 |
Q |
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| T |
48702787 |
ttgggaaatccaaactcattcaagctgttgtgttggcacatccatcattaatcacagtag |
48702846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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