View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_low_5 (Length: 405)
Name: NF6509_low_5
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 38942989 - 38942708
Alignment:
| Q |
19 |
tattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgggtggttgattgaattgcagggta |
118 |
Q |
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| T |
38942989 |
tattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgggtggttgattgaattgcagggta |
38942890 |
T |
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| Q |
119 |
atttggaacgggaagtgattgtgtacaactaaagggagatgagattattgtgatagtatgaattgttgaggttgttgtgattgtctattctttttactat |
218 |
Q |
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| T |
38942889 |
atttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattattgtggtagtatgaattgttgaggttgttgtcattgtctattctttttactct |
38942791 |
T |
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| Q |
219 |
gaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaagtagattcaggaaagttttttgaaaaggaaaacag |
301 |
Q |
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| T |
38942790 |
gaagccatttcctctgtgtgtagattcagttgagttttttaggtacaagtagattcaggaaagctttttgaaaaggaaaacag |
38942708 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
129 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
226 |
Q |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
227 |
ttcctgtgtgtgtagattcag |
247 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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