View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_low_6 (Length: 377)
Name: NF6509_low_6
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 55578110 - 55577761
Alignment:
| Q |
16 |
aagatttgaaaagacagggagattaacatcataaactagtccaaaacaaagtaataaaccccagattgaaaagaaaagaagctaagcagtactatagttt |
115 |
Q |
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| T |
55578110 |
aagatttgaaaagacagggagattaacatcataaactagtccaaaacaaagtaataaaccccaaattgaaaagaaaagaagctaagcagtactatagttt |
55578011 |
T |
|
| Q |
116 |
tatgcaaggccacaatcttgtgttcaatgccagtatggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattt |
215 |
Q |
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| T |
55578010 |
tatgcaaggccacaatcttgtgttcaatgccagtatggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattt |
55577911 |
T |
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| Q |
216 |
tgtctgtcatagctgaggggtatttccaagatacagccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgta |
315 |
Q |
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| T |
55577910 |
tgtctgtcatagctgaggggtatttccaagatacagccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgta |
55577811 |
T |
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| Q |
316 |
acaaagcacgatctgtcgaggccaatgatcggttcttggatcttcaattt |
365 |
Q |
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| T |
55577810 |
acaaagcacgatctgtcgaggccaatgatcggttcttggatcttcaattt |
55577761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 21257002 - 21256948
Alignment:
| Q |
37 |
attaacatcataaactagtccaaaacaaagtaataaaccccagattgaaaagaaa |
91 |
Q |
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| T |
21257002 |
attaaaatcataaactagtccaaaataaagtaataaacaccaaattgaaaagaaa |
21256948 |
T |
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