View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6509_low_8 (Length: 295)
Name: NF6509_low_8
Description: NF6509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6509_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 27946244 - 27946530
Alignment:
| Q |
1 |
gcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaaattttagatatacctctaaatttccaaaattcattgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27946244 |
gcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaaattttagatatacctctaaatttccaaaattcattgatc |
27946343 |
T |
|
| Q |
101 |
agtttgtacttatcagattttgatgctagttgttgttaaggtcattgtaaaatggacttctttgatacccgttttaattgagtcaaattgtacagcagat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27946344 |
agtttgtacttatctgattttgatgctagttgttgttaaggtcattgtaaaatggacttctttgatacccgttttaattgagtcaaatggtacagcagat |
27946443 |
T |
|
| Q |
201 |
acaagtattttctaattggtcagaggatgagataaaggctagccaagactgataagaggaatg-catcaaagaatatatgatgatgt |
286 |
Q |
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| T |
27946444 |
acaagtattttctaatttgtgagaggatgagataaaggctagccaagactgataagaggaatgccatcaaagaatatatgatgatgt |
27946530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27437881 - 27438020
Alignment:
| Q |
1 |
gcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaaattttagatatacctctaaatttccaaaattcattgatc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27437881 |
gcatggtttatctgtagtccatgactgtatcttttctactctctaagttttgtttactgaaattttagatatacctctaaatttccaaaatttattgatc |
27437980 |
T |
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| Q |
101 |
agtttgtacttatcagattttgatgctagttgttgttaag |
140 |
Q |
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| T |
27437981 |
agtttgtacttatcagattttgatgctagttgtggttaag |
27438020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 27548508 - 27548386
Alignment:
| Q |
9 |
tatctatagtccatgactgt--atcttttctactttctatgttttgtttactgaaattttagatatac--------ctctaaatttccaaaattcattga |
98 |
Q |
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|||||||||||||||||||| |||||||||||| |||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
27548508 |
tatctatagtccatgactgtgtatcttttctactctctaacttttgtctactcaaattttagatatatacctctaactctaaatttccaaaattcattga |
27548409 |
T |
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| Q |
99 |
tcagtttgtacttatcagatttt |
121 |
Q |
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||||||||||||||||||||||| |
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| T |
27548408 |
tcagtttgtacttatcagatttt |
27548386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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