View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6510_high_11 (Length: 440)
Name: NF6510_high_11
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 2215314 - 2214901
Alignment:
| Q |
12 |
agagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215314 |
agagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaa |
2215215 |
T |
|
| Q |
112 |
acaatacattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacatt |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215214 |
acaatgcattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacatt |
2215115 |
T |
|
| Q |
212 |
ccgctattacttagactaactgctggtggaccaagatagggatacaactcaaccaactatttatgctgcaaaggggactcagcaattgcaggcaatgcca |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2215114 |
ccgctattacttagactaactgccggtggaccaagatagtgatacaactcaaccaactatttatgctgcaaagggg-ctcagcaattgcaggcaatgcca |
2215016 |
T |
|
| Q |
312 |
attgattatacatggagcagctttcatgtccaattttcaagtaagagtagaacgagtaataatacatgaaatgaataactcaccaattgtaaaaattcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215015 |
attgattatacatggagcagctttcatgtccaattttcaagtaagagtagaacgagtaataatacatgaaatgaataactcaccaattgtaaaaattcag |
2214916 |
T |
|
| Q |
412 |
tccatgaatatattg |
426 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2214915 |
tccatgaatatattg |
2214901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 2202717 - 2202306
Alignment:
| Q |
12 |
agagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaa |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
2202717 |
agagacattaatttctgcaagccatacttgtaatgaggtttagaaaaataacttttaatgcatatgtatctataaaaattgacccaagtcaactaaccaa |
2202618 |
T |
|
| Q |
112 |
acaatacattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacatt |
211 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
2202617 |
tcaatgcataagtttccattgacctgatatcatccttatttttcttacttgaattgcataacaagta-------tgttaacttatttctttccacacatt |
2202525 |
T |
|
| Q |
212 |
ccgctattacttagactaactgctggtggaccaagatagggatacaactcaaccaactatttatgctgcaaaggggactc--agcaattgcaggcaatgc |
309 |
Q |
| |
|
|| ||| ||||||| |||||||| | ||||| |||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
2202524 |
ccactagtacttaggctaactgccagaggaccgagatagtgatacaactcaaccaactatttatgctgcataggggactcagagaaattgcaggcaatgc |
2202425 |
T |
|
| Q |
310 |
caattgattatacatggagcagctttcatgtccaattttcaagtaagagtagaacgagta--ataatacatgaaatgaataactcaccaattgtaaaaat |
407 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2202424 |
caattaattatacaaggagcagctttcatgtccaatttacaagtaagagtagaaagagtaatataacacatgaaatgaataactcaccaattgtaaaaat |
2202325 |
T |
|
| Q |
408 |
tcagtccatgaatatattg |
426 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2202324 |
tcagtccatgaatatattg |
2202306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University