View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6510_high_17 (Length: 334)
Name: NF6510_high_17
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_17 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 10434757 - 10434450
Alignment:
| Q |
13 |
aatatcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtga |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434757 |
aatatcattagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtga |
10434658 |
T |
|
| Q |
113 |
ttacatcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcag |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434657 |
ttacatcaaaaacaccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcag |
10434558 |
T |
|
| Q |
213 |
atcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgat |
312 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434557 |
atcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgat |
10434458 |
T |
|
| Q |
313 |
gcaaggtg |
320 |
Q |
| |
|
||||||| |
|
|
| T |
10434457 |
ccaaggtg |
10434450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 10376555 - 10376251
Alignment:
| Q |
16 |
atcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgatta |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10376555 |
atcaacagaagatggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgatta |
10376456 |
T |
|
| Q |
116 |
catcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatc |
215 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10376455 |
catcaaaaacaccaaactcaatgtctcactcttgaggcagttaaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatc |
10376356 |
T |
|
| Q |
216 |
aacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgca |
315 |
Q |
| |
|
| |||| || |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10376355 |
atcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaatcagttatgattccctgcgatgca |
10376256 |
T |
|
| Q |
316 |
aggtg |
320 |
Q |
| |
|
||||| |
|
|
| T |
10376255 |
aggtg |
10376251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 10364511 - 10364209
Alignment:
| Q |
13 |
aatatcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtga |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
10364511 |
aatatcaacagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttga |
10364412 |
T |
|
| Q |
113 |
ttacatcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcag |
212 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10364411 |
ttacatcaaaaacaccaaactcaatgactcactcttgaggcagttacaaacaacactgctcactcttcaagttgtgctggatgacgcagaagagaagcag |
10364312 |
T |
|
| Q |
213 |
atcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgat |
312 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
10364311 |
atcaacaatcctgctgtcaaacaatggcttgatggcttgaaagatgctgtctttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgat |
10364212 |
T |
|
| Q |
313 |
gca |
315 |
Q |
| |
|
||| |
|
|
| T |
10364211 |
gca |
10364209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 320
Target Start/End: Original strand, 10579968 - 10580264
Alignment:
| Q |
24 |
aagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnnn |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10579968 |
aagatggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaa |
10580067 |
T |
|
| Q |
124 |
nnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattc |
223 |
Q |
| |
|
| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
10580068 |
acactaagctcaatgtctcactcttgaggcagcttaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaataatcc |
10580167 |
T |
|
| Q |
224 |
tgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
10580168 |
tgctgtcaaactatggcttgatgacttgaaagatgctatcattgatgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtg |
10580264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 320
Target Start/End: Original strand, 10088175 - 10088453
Alignment:
| Q |
42 |
ataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnnnnnnccaagctcaatgact |
141 |
Q |
| |
|
|||||| | |||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||| | |||| || |
|
|
| T |
10088175 |
ataggaagtgcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtct |
10088274 |
T |
|
| Q |
142 |
cactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggct |
241 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
10088275 |
cactctcgaggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggct |
10088374 |
T |
|
| Q |
242 |
cgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10088375 |
tgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtg |
10088453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 320
Target Start/End: Original strand, 10195058 - 10195336
Alignment:
| Q |
42 |
ataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnnnnnnccaagctcaatgact |
141 |
Q |
| |
|
|||||| | |||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||| | |||| || |
|
|
| T |
10195058 |
ataggaagtgcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtct |
10195157 |
T |
|
| Q |
142 |
cactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
10195158 |
cactcttgaggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggct |
10195257 |
T |
|
| Q |
242 |
cgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10195258 |
tgatgacttgaaagatgctgtctttgatgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtg |
10195336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 9838220 - 9838524
Alignment:
| Q |
16 |
atcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgatta |
115 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9838220 |
atcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgatta |
9838319 |
T |
|
| Q |
116 |
catcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatc |
215 |
Q |
| |
|
|||| | |||||||||| |||||||||||||||| | || |||| | |||| |||||| | ||| || |||||||||||||||||||||||| |
|
|
| T |
9838320 |
catcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatc |
9838419 |
T |
|
| Q |
216 |
aacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgca |
315 |
Q |
| |
|
| |||| | |||||| || ||||| ||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9838420 |
agcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgca |
9838519 |
T |
|
| Q |
316 |
aggtg |
320 |
Q |
| |
|
||||| |
|
|
| T |
9838520 |
aggtg |
9838524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 9849098 - 9849402
Alignment:
| Q |
16 |
atcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgatta |
115 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9849098 |
atcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgatta |
9849197 |
T |
|
| Q |
116 |
catcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatc |
215 |
Q |
| |
|
|||| | |||||||||| |||||||||||||||| | || |||| | |||| |||||| | ||| || |||||||||||||||||||||||| |
|
|
| T |
9849198 |
catcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatc |
9849297 |
T |
|
| Q |
216 |
aacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgca |
315 |
Q |
| |
|
| |||| | |||||| || ||||| ||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9849298 |
agcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgca |
9849397 |
T |
|
| Q |
316 |
aggtg |
320 |
Q |
| |
|
||||| |
|
|
| T |
9849398 |
aggtg |
9849402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 11768600 - 11768894
Alignment:
| Q |
23 |
gaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnn |
122 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11768600 |
gaagatggcggcaactatgataggaggcgcttttctctcggcaactatgcaaaccttgtttgagaaacttgcttcaacagagtttcttgattacatcaaa |
11768699 |
T |
|
| Q |
123 |
nnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatt |
222 |
Q |
| |
|
||||||| |||| ||||||||||||||| | |||||||| || ||||| ||||| | ||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
11768700 |
aacaccaagctgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttcaggctgtactggatgatgcggaggagaagcagatgaacaatc |
11768799 |
T |
|
| Q |
223 |
ctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaag |
317 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||| || ||| | |||| |||||||| ||||| ||||||||| |
|
|
| T |
11768800 |
ttgctgtcaaacaatggcttgatgacttgaaagacgctatctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaag |
11768894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 10076632 - 10076929
Alignment:
| Q |
23 |
gaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnn |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
10076632 |
gaagatggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaa |
10076731 |
T |
|
| Q |
123 |
nnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaatt |
222 |
Q |
| |
|
| || || |||| |||||||| || ||| | ||||||| | |||| |||||| | ||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
10076732 |
aacacaaatctgaatgtatcactcttcagacagttacaaacaaccatgctcaatcttcaggctgtactagatgatgcagaggagaagcagatcagcaatc |
10076831 |
T |
|
| Q |
223 |
ctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
| ||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
10076832 |
cccatgtcagacagtggcttgataacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtg |
10076929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 8860805 - 8860949
Alignment:
| Q |
176 |
tcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgag |
275 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||| ||| |
|
|
| T |
8860805 |
tcttcaagctgtgctggatgatgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgag |
8860904 |
T |
|
| Q |
276 |
gacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
|| ||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
8860905 |
gatttgctcaaccaaatcagttatgattcattacgatgcaaggtg |
8860949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 11149451 - 11149260
Alignment:
| Q |
129 |
aagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctg |
228 |
Q |
| |
|
||||| |||| ||||||||||| |||| | |||||||||| || |||||||| ||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
11149451 |
aagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctggatgatgctgatgagaagcagatcaacaatcctgctg |
11149352 |
T |
|
| Q |
229 |
tcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||||||||||| ||||| || |||| |||||||| || || |||||||||||| |
|
|
| T |
11149351 |
tcaaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtg |
11149260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 13289026 - 13289328
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattaca |
117 |
Q |
| |
|
|||||||| |||||||||||| || | |||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
13289026 |
caatagaaaatggctgcaactttggtgggaggagcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattaca |
13289125 |
T |
|
| Q |
118 |
tcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaa |
217 |
Q |
| |
|
|| |||||| ||| |||||||||| || || |||||||||| ||| ||||||| || ||||||||||||||||| |||||| |||| |
|
|
| T |
13289126 |
tcagaaacaacaagctgaattcctcactcttggcagagttggaaacaacactactcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcac |
13289225 |
T |
|
| Q |
218 |
caattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaag |
317 |
Q |
| |
|
||| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| ||| |
|
|
| T |
13289226 |
caacactgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaag |
13289325 |
T |
|
| Q |
318 |
gtg |
320 |
Q |
| |
|
||| |
|
|
| T |
13289326 |
gtg |
13289328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 13332265 - 13332567
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattaca |
117 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
13332265 |
caatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattaca |
13332364 |
T |
|
| Q |
118 |
tcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaa |
217 |
Q |
| |
|
|| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||| | ||||||||||||||||| ||||||| |||| |
|
|
| T |
13332365 |
tcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcagaacagaagcaaatcac |
13332464 |
T |
|
| Q |
218 |
caattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaag |
317 |
Q |
| |
|
||| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| ||| |
|
|
| T |
13332465 |
caacactgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaag |
13332564 |
T |
|
| Q |
318 |
gtg |
320 |
Q |
| |
|
||| |
|
|
| T |
13332565 |
gtg |
13332567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 10505144 - 10505247
Alignment:
| Q |
16 |
atcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgatta |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
10505144 |
atcaacagaagatggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgatta |
10505243 |
T |
|
| Q |
116 |
catc |
119 |
Q |
| |
|
|||| |
|
|
| T |
10505244 |
catc |
10505247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 129 - 320
Target Start/End: Original strand, 10888778 - 10888969
Alignment:
| Q |
129 |
aagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctg |
228 |
Q |
| |
|
||||| |||| ||||||||||| |||| | ||||||| || || |||||||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10888778 |
aagctgaatgtctcactcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctg |
10888877 |
T |
|
| Q |
229 |
tcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| |||| |||||||| || | |||||||||||| |
|
|
| T |
10888878 |
tcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtg |
10888969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 11160719 - 11160423
Alignment:
| Q |
24 |
aagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnnn |
123 |
Q |
| |
|
||||| ||||||||| || | ||||| || ||||| ||||| ||||||||||| || |||| ||||| |||||| ||||||||||||| |||| |
|
|
| T |
11160719 |
aagattgctgcaactttggttggaggtgcatttctatctgcttctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatttcatcaaca |
11160620 |
T |
|
| Q |
124 |
nnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattc |
223 |
Q |
| |
|
||| | |||| ||||||||||| |||| | ||||||| | || ||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11160619 |
ataagaagttgaatgtctcactcttgaagcagttacaaacaacgttgctggttctacaagctgtgctggatgatgcagaggagaagtagatcaacaaccg |
11160520 |
T |
|
| Q |
224 |
tgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| || || |||||||||||| |
|
|
| T |
11160519 |
tgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtg |
11160423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 13160342 - 13160636
Alignment:
| Q |
19 |
aatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacat |
118 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
13160342 |
aatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacat |
13160441 |
T |
|
| Q |
119 |
cnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaac |
218 |
Q |
| |
|
| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||| || ||||||||||||||||| |||||| |||| | |
|
|
| T |
13160442 |
cagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcacc |
13160541 |
T |
|
| Q |
219 |
aattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatg |
313 |
Q |
| |
|
|| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| |
|
|
| T |
13160542 |
aacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatg |
13160636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 13170392 - 13170694
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattaca |
117 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
13170392 |
caatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattaca |
13170491 |
T |
|
| Q |
118 |
tcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaa |
217 |
Q |
| |
|
|| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||| | || || ||||||||||| ||||||| |||| |
|
|
| T |
13170492 |
tcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcagaacagaagcaaatcac |
13170591 |
T |
|
| Q |
218 |
caattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaag |
317 |
Q |
| |
|
||| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| ||| |
|
|
| T |
13170592 |
caacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaag |
13170691 |
T |
|
| Q |
318 |
gtg |
320 |
Q |
| |
|
||| |
|
|
| T |
13170692 |
gtg |
13170694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 11131728 - 11131432
Alignment:
| Q |
24 |
aagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcnnnn |
123 |
Q |
| |
|
|||||||| |||||| || | ||||| || ||||||||||| |||| |||||| | |||| ||||| |||||| ||||||||||||| |||| |
|
|
| T |
11131728 |
aagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgacaaactaacttcaactgagtttcgtgatttcatcaaca |
11131629 |
T |
|
| Q |
124 |
nnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattc |
223 |
Q |
| |
|
||||| |||| ||||||||||| |||| | |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11131628 |
acaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccg |
11131529 |
T |
|
| Q |
224 |
tgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||| |||||||||| ||||| ||||| || |||| |||||||| || || |||||||||||| |
|
|
| T |
11131528 |
tgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggaggatttgctgaatcaaattagttatgagtcactgcgatgcaaggtg |
11131432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 13343450 - 13343726
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattaca |
117 |
Q |
| |
|
|||||||| |||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
13343450 |
caatagaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattaca |
13343549 |
T |
|
| Q |
118 |
tcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaa |
217 |
Q |
| |
|
| ||||||| ||| ||| || || || || |||||||||| ||| ||||||| | ||||||||||||||||| | ||||| |||| |
|
|
| T |
13343550 |
taagaaacaccaagctgaattcctcgctgtttgcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcagaacataagcaaatcac |
13343649 |
T |
|
| Q |
218 |
caattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatca |
294 |
Q |
| |
|
||| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| |
|
|
| T |
13343650 |
caacactgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca |
13343726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 10516988 - 10517100
Alignment:
| Q |
157 |
tgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaaga |
256 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||||||| |||| ||| |||| || | ||||||| |||||||| |||||||||||||| |
|
|
| T |
10516988 |
tgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaatgatcttcctgtcaaacaatggcttgatgacttgaaaga |
10517087 |
T |
|
| Q |
257 |
tgctgtctttgat |
269 |
Q |
| |
|
||| |||||||| |
|
|
| T |
10517088 |
tgcaatctttgat |
10517100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 11782548 - 11782446
Alignment:
| Q |
157 |
tgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaaga |
256 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||||||| |||| ||| |||| || | ||||||| |||||||| |||||||||||||| |
|
|
| T |
11782548 |
tgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaaagatcttcctgtcaaacaatggcttgatgacttgaaaga |
11782449 |
T |
|
| Q |
257 |
tgc |
259 |
Q |
| |
|
||| |
|
|
| T |
11782448 |
tgc |
11782446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4080970 - 4080909
Alignment:
| Q |
180 |
caagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggct |
241 |
Q |
| |
|
|||| ||| ||| ||||||| |||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
4080970 |
caagctgtactgaatgatgctgaggagaagcagatcaccaaccctgctgtcaagcaatggct |
4080909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 10541543 - 10541588
Alignment:
| Q |
226 |
ctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgc |
271 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
10541543 |
ctgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgc |
10541588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 4061349 - 4061274
Alignment:
| Q |
193 |
atgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttga |
268 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||| ||| ||||||||||||||| |
|
|
| T |
4061349 |
atgatgctgaggagaagcagatcaccaaccctgctgtcaagaaatggctggatctgttgcgagatgctgtctttga |
4061274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 3884670 - 3884763
Alignment:
| Q |
154 |
agctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatga |
247 |
Q |
| |
|
||||||||| |||||| | | |||||||| |||| || ||||||| ||||||||||| |||| ||| |||||||||| ||||||| ||||| |
|
|
| T |
3884670 |
agctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatga |
3884763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 4129233 - 4129298
Alignment:
| Q |
176 |
tcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggct |
241 |
Q |
| |
|
|||||||| ||| || ||||||| |||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
4129233 |
tcttcaagctgtacttcatgatgctgaggagaaacagatcaccaaccctgctgtcaagcaatggct |
4129298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 10085622 - 10085735
Alignment:
| Q |
171 |
ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatg |
270 |
Q |
| |
|
|||| |||||| | ||| || ||||||||| ||||||||||||||| ||| | |||||| || ||||| ||| |||||||||||| | ||||||||| |
|
|
| T |
10085622 |
ctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatg |
10085721 |
T |
|
| Q |
271 |
ccgaggacttgctc |
284 |
Q |
| |
|
| || || |||||| |
|
|
| T |
10085722 |
ctgaagatttgctc |
10085735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 10192542 - 10192655
Alignment:
| Q |
171 |
ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatg |
270 |
Q |
| |
|
|||| |||||| | ||| || ||||||||| ||||||||||||||| ||| | |||||| || ||||| ||| |||||||||||| | ||||||||| |
|
|
| T |
10192542 |
ctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatg |
10192641 |
T |
|
| Q |
271 |
ccgaggacttgctc |
284 |
Q |
| |
|
| || || |||||| |
|
|
| T |
10192642 |
ctgaagatttgctc |
10192655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 50510 - 50211
Alignment:
| Q |
21 |
tagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcn |
120 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
50510 |
tagaagatggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatca |
50411 |
T |
|
| Q |
121 |
nnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaa |
220 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50410 |
aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgctgaggagaagcagatcaacaa |
50311 |
T |
|
| Q |
221 |
ttctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
| |||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
50310 |
tcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtg |
50211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 26906257 - 26906556
Alignment:
| Q |
17 |
tcaatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattac |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| || |||||||||||||||| ||||| | |||||| ||||||| |
|
|
| T |
26906257 |
tcaatagaagatggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagttgagaaacttgtttcaacacagtttcttgattac |
26906356 |
T |
|
| Q |
117 |
atcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatca |
216 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26906357 |
atcaaaaacaccaagctcaatgtctcactcttgaggcagctaaaaacaacactgctcactctgcaggttgtgctggatgatgcagaggagaaacagatca |
26906456 |
T |
|
| Q |
217 |
acaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaa |
316 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
26906457 |
acaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaa |
26906556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 44958383 - 44958285
Alignment:
| Q |
21 |
tagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
44958383 |
tagaagatggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagttgagaaacttgcttcaacagagtttcttgattacatc |
44958285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 44958265 - 44958119
Alignment:
| Q |
170 |
tctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgat |
269 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |||| ||| | ||||||| |||||||| |||||||||||| || | | |||||| |
|
|
| T |
44958265 |
tctcactcttcaggttgtgcttgatgatgcagaggagaagcaaatcaccaaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgat |
44958166 |
T |
|
| Q |
270 |
gccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaa |
316 |
Q |
| |
|
|||||||| ||||||||| |||| || ||||||||||| || ||||| |
|
|
| T |
44958165 |
gccgaggatttgctcaaccaaattagctatgattccctgcgttgcaa |
44958119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 11484609 - 11484679
Alignment:
| Q |
249 |
ttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggt |
319 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||| || |||||||| |||||| || | ||||||||||| |
|
|
| T |
11484609 |
ttgaaagatgcaatctttgatgctgaggatttgcttaatgaaatcagctatgatgccttgcgatgcaaggt |
11484679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 136596 - 136294
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattaca |
117 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
136596 |
caatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattaca |
136497 |
T |
|
| Q |
118 |
tcnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaa |
217 |
Q |
| |
|
|| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||| | || || ||||||||||| ||||||| |||| |
|
|
| T |
136496 |
tcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcagaacagaagcaaatcac |
136397 |
T |
|
| Q |
218 |
caattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaag |
317 |
Q |
| |
|
||| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| ||| |
|
|
| T |
136396 |
caacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaag |
136297 |
T |
|
| Q |
318 |
gtg |
320 |
Q |
| |
|
||| |
|
|
| T |
136296 |
gtg |
136294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 146646 - 146352
Alignment:
| Q |
19 |
aatagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacat |
118 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
146646 |
aatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacat |
146547 |
T |
|
| Q |
119 |
cnnnnnnnccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaac |
218 |
Q |
| |
|
| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||| || ||||||||||||||||| |||||| |||| | |
|
|
| T |
146546 |
cagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcacc |
146447 |
T |
|
| Q |
219 |
aattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatg |
313 |
Q |
| |
|
|| |||||||||| |||||| | ||| | |||||||||| ||| |||||| ||||| ||||| ||| |||||| ||| || ||||| ||||| |
|
|
| T |
146446 |
aacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatg |
146352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 31680303 - 31680145
Alignment:
| Q |
162 |
acaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctg |
261 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||||||| ||| ||||||||||||||||| | ||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
31680303 |
acaacacttctcactcttcatgctgttcttgatgatgctgagaagaagcagatcaacaatcttcctgtcaaacaatggcttgatgagttgaaagatgcaa |
31680204 |
T |
|
| Q |
262 |
tctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatgcaaggtg |
320 |
Q |
| |
|
| | |||||| ||||| ||||||||| | ||||||||||||| |||| || |||||||| |
|
|
| T |
31680203 |
tatatgatgctgaggatttgctcaaccagatcagttatgattgccttagaagcaaggtg |
31680145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 19956978 - 19957058
Alignment:
| Q |
18 |
caatagaagatggctgcaactatgataggaggagcttttctctctgcaa-ctgttcaaaccttagttgagaaacttgcttc |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
19956978 |
caatagaagatggttgcaactatgataggaggagcttttctctcagcaacctattcaaaccttagttgagaaacttgcttc |
19957058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 29836145 - 29836231
Alignment:
| Q |
129 |
aagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatc |
215 |
Q |
| |
|
||||| ||| |||| ||||||| |||| || |||||||||||||||||||| ||| ||||| | |||||||||| |||||||||| |
|
|
| T |
29836145 |
aagctgaatcactctctcttgaagcagttgcaaacaacacttctcactcttgaagcggtgctagttgatgcagagaggaagcagatc |
29836231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 13932677 - 13932752
Alignment:
| Q |
193 |
atgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatgacttgaaagatgctgtctttga |
268 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||| ||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
13932677 |
atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttga |
13932752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 14006026 - 14005933
Alignment:
| Q |
154 |
agctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggctcgatga |
247 |
Q |
| |
|
||||||||| |||||| | | |||||||| |||| || ||||||| ||||||||||| |||| ||| |||||||||| ||||||| ||||| |
|
|
| T |
14006026 |
agctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatga |
14005933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 17960 - 18025
Alignment:
| Q |
176 |
tcttcaagttgtgctggatgatgcagaggagaagcagatcaacaattctgctgtcaagcaatggct |
241 |
Q |
| |
|
|||||||| ||| ||| ||||||| || ||||| || |||| |||| ||||||||||||||||||| |
|
|
| T |
17960 |
tcttcaagctgtactgaatgatgctgaagagaaacaaatcaccaatcctgctgtcaagcaatggct |
18025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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