View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_20 (Length: 323)
Name: NF6510_high_20
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 5078548 - 5078400
Alignment:
| Q |
138 |
ttcattcctccgaaaccctttcttccttcattttcaacgatgaatctcagtaacttcaagtttctcggtnnnnnnntgacaatggtaataac-gaaaaac |
236 |
Q |
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| T |
5078548 |
ttcattcctccgaaaccctttcttccttcattttcaacgatgaatctcagtaacttcaagtttctcggtaaaaaaatgacaatgacaataacaaaaaaac |
5078449 |
T |
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| Q |
237 |
ataatgcaagtttcaattcctccattggctcctcactcatgtcatccac |
285 |
Q |
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| T |
5078448 |
ataatgcaagtttcaattcctccattggctcctcactcatgtcatccac |
5078400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 5084539 - 5084467
Alignment:
| Q |
214 |
tgacaatggtaataacgaaaaa-cataatgcaagtttcaattcctccattggctcctcactcatgtcatccac |
285 |
Q |
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| T |
5084539 |
tgacaatggcaataacaaaaaaacataatgcaagtctcaattcctccattggctcctcactcatgtcatccac |
5084467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 18306473 - 18306527
Alignment:
| Q |
85 |
atacttagtggagttaaagagttttcttt-gttttcttttcatcgtgtgtcaatt |
138 |
Q |
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| T |
18306473 |
atacttagtggagttaaagagttttctttaattttcttttcatcgtgtgtcaatt |
18306527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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