View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6510_high_21 (Length: 309)
Name: NF6510_high_21
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 3373944 - 3374205
Alignment:
| Q |
29 |
aagatcatacatggtgatactttaaatccatgtgtcctcaggagctcaaatgccaggctatctttctgaagctgcaaagcattcatattcaatggttgta |
128 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3373944 |
aagatcatacatggtgacactttgaagccatgtgtccgcaggagctcaaatgccagactatctttctgaagctgcaaagcattcatattcaatggttgta |
3374043 |
T |
|
| Q |
129 |
cccgtgaattttgttccttactataattcctaaaattaaatatcaatcaaatattagttaaataatatatacagtttattttacatggtgaagacaaata |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3374044 |
cccgtgaattttgttccttactataattcctaatattaaatatcaatcaaatattagttaaataatatatatagtttattttacatggtgaagacaaata |
3374143 |
T |
|
| Q |
229 |
atatattcctaattatcacaattatgttccttattataattctatacattggctgcaaattc |
290 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3374144 |
atatattcctaattatcacagttatgttccttattataattctatacattggctgcaaattc |
3374205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3347506 - 3347622
Alignment:
| Q |
1 |
aataataaataatagcaccgataaaattaagatcatacatggtgatactttaaatccatgtgtcctcaggagctcaaatgccaggctatctttctgaagc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3347506 |
aataataaataatagcaccaataaaattaagatcatacatggtgatactttaaatccatgtgtcctaaggagctcaaatgccagactatctttctgaagc |
3347605 |
T |
|
| Q |
101 |
tgcaaagcattcatatt |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3347606 |
tgcaaagcattcatatt |
3347622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University