View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_35 (Length: 240)
Name: NF6510_high_35
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_35 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 5327828 - 5328050
Alignment:
| Q |
18 |
attgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattttcatactacttacacatttctactaatggttcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5327828 |
attgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattttcagactacttacacatttctactaatggttcatt |
5327927 |
T |
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| Q |
118 |
tttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaacaaataccagagcaagttgcttgaagtaattgatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5327928 |
tttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaacaaataccagagcaagttgcttgaagtaattgatgc |
5328027 |
T |
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| Q |
218 |
caggtaaaatttatctcctttct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
5328028 |
caggtaaaatttatctcctttct |
5328050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 54773990 - 54774212
Alignment:
| Q |
18 |
attgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattttcatactacttacacatttctactaatggttcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54773990 |
attgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaagcattttcagactacttacacatttctactaatggttcatt |
54774089 |
T |
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| Q |
118 |
tttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaacaaataccagagcaagttgcttgaagtaattgatgc |
217 |
Q |
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| T |
54774090 |
tttagttaacttgttaagcaaggaaatgaacatgttaatgattcattgaccaggtcctaggtaacaaataccagagcaagttgcttgaagtaattgatgc |
54774189 |
T |
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| Q |
218 |
caggtaaaatttatctcctttct |
240 |
Q |
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| T |
54774190 |
caggtaaaatttatctcctttct |
54774212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 26639534 - 26639594
Alignment:
| Q |
162 |
attgaccaggtcctaggtaacaaataccagagcaagttgcttgaagtaattgatgccaggt |
222 |
Q |
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| T |
26639534 |
attgatcaggtcctaggtaacaaatatcagagcaagttgcttgaaatcatcgatgccaggt |
26639594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 26639392 - 26639450
Alignment:
| Q |
19 |
ttgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgtaag |
77 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| |
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| T |
26639392 |
ttgtggaacactgttaagtccttccttgatcccaagactacctcgaaaatccacgtaag |
26639450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 8071053 - 8071107
Alignment:
| Q |
20 |
tgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgt |
74 |
Q |
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|||||||||||||||| || ||||| |||||||||||||| |||||||| |||| |
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| T |
8071053 |
tgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgt |
8071107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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