View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6510_high_37 (Length: 240)

Name: NF6510_high_37
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6510_high_37
NF6510_high_37
[»] chr2 (12 HSPs)
chr2 (19-240)||(18908785-18909006)
chr2 (19-240)||(18920741-18920962)
chr2 (19-240)||(18913533-18913754)
chr2 (144-214)||(25377072-25377142)
chr2 (144-214)||(14514898-14514968)
chr2 (153-234)||(22051731-22051812)
chr2 (138-214)||(554468-554544)
chr2 (146-193)||(20712556-20712603)
chr2 (145-200)||(20975557-20975612)
chr2 (146-216)||(20980604-20980674)
chr2 (145-198)||(10205462-10205515)
chr2 (146-222)||(20967700-20967776)
[»] scaffold0464 (1 HSPs)
scaffold0464 (23-240)||(7938-8155)
[»] chr3 (5 HSPs)
chr3 (23-240)||(12734766-12734983)
chr3 (64-240)||(32578841-32579017)
chr3 (132-214)||(25901281-25901363)
chr3 (132-214)||(25915299-25915381)
chr3 (152-227)||(3625740-3625815)
[»] chr7 (53 HSPs)
chr7 (31-240)||(19357795-19358004)
chr7 (50-234)||(19351051-19351235)
chr7 (64-216)||(19721939-19722088)
chr7 (64-240)||(19779520-19779696)
chr7 (64-240)||(19887687-19887863)
chr7 (145-226)||(19344565-19344646)
chr7 (147-227)||(660836-660916)
chr7 (146-227)||(29454092-29454173)
chr7 (144-220)||(22028626-22028702)
chr7 (145-227)||(14076677-14076759)
chr7 (145-227)||(14386705-14386787)
chr7 (145-214)||(22063641-22063710)
chr7 (152-214)||(19604465-19604527)
chr7 (146-227)||(12819905-12819986)
chr7 (145-214)||(22100492-22100561)
chr7 (146-227)||(36263053-36263134)
chr7 (163-227)||(6864796-6864860)
chr7 (99-227)||(15571884-15572012)
chr7 (145-237)||(22080867-22080959)
chr7 (146-226)||(29921983-29922063)
chr7 (146-226)||(36260253-36260333)
chr7 (149-200)||(16839397-16839448)
chr7 (149-200)||(16846480-16846531)
chr7 (145-227)||(19325974-19326056)
chr7 (145-227)||(20058046-20058128)
chr7 (146-200)||(26256775-26256829)
chr7 (152-234)||(29874517-29874599)
chr7 (146-203)||(20414882-20414939)
chr7 (144-209)||(22021390-22021455)
chr7 (145-214)||(22070110-22070179)
chr7 (146-227)||(29430990-29431071)
chr7 (146-227)||(29859454-29859535)
chr7 (146-223)||(29899374-29899451)
chr7 (175-227)||(24002228-24002280)
chr7 (146-193)||(9807824-9807871)
chr7 (146-225)||(35205915-35205994)
chr7 (152-214)||(18514789-18514851)
chr7 (144-214)||(18952907-18952977)
chr7 (144-214)||(18982954-18983024)
chr7 (144-214)||(18997600-18997670)
chr7 (154-212)||(19597659-19597717)
chr7 (146-212)||(21218712-21218778)
chr7 (98-200)||(22037038-22037140)
chr7 (148-198)||(24031257-24031307)
chr7 (145-198)||(20338923-20338976)
chr7 (155-220)||(22039955-22040020)
chr7 (178-227)||(24010415-24010464)
chr7 (147-200)||(26217968-26218021)
chr7 (170-227)||(36255390-36255447)
chr7 (146-214)||(19637219-19637287)
chr7 (146-198)||(29106814-29106866)
chr7 (146-226)||(29445646-29445726)
chr7 (146-234)||(29867236-29867324)
[»] chr6 (11 HSPs)
chr6 (64-212)||(14749315-14749463)
chr6 (144-214)||(6921352-6921422)
chr6 (146-227)||(20770650-20770731)
chr6 (146-210)||(24950150-24950214)
chr6 (144-214)||(6935220-6935290)
chr6 (144-217)||(6954518-6954591)
chr6 (99-216)||(24254426-24254543)
chr6 (148-197)||(33576172-33576221)
chr6 (163-227)||(17369681-17369745)
chr6 (163-214)||(6947882-6947933)
chr6 (148-197)||(5979029-5979078)
[»] chr5 (8 HSPs)
chr5 (118-224)||(29597544-29597650)
chr5 (145-224)||(29647675-29647754)
chr5 (144-209)||(28763912-28763977)
chr5 (145-224)||(29642358-29642437)
chr5 (148-197)||(23086784-23086833)
chr5 (146-214)||(24330901-24330969)
chr5 (152-227)||(18964819-18964894)
chr5 (146-212)||(42298111-42298177)
[»] chr4 (15 HSPs)
chr4 (145-225)||(53774839-53774919)
chr4 (145-227)||(11970971-11971053)
chr4 (146-227)||(3565744-3565825)
chr4 (145-226)||(35767017-35767098)
chr4 (145-227)||(53790552-53790634)
chr4 (146-227)||(3557726-3557807)
chr4 (145-234)||(11981665-11981754)
chr4 (163-224)||(6113096-6113157)
chr4 (146-227)||(19361442-19361523)
chr4 (132-214)||(10553548-10553630)
chr4 (169-227)||(19359160-19359218)
chr4 (170-227)||(3560947-3561004)
chr4 (145-214)||(8443456-8443525)
chr4 (144-200)||(837774-837830)
chr4 (152-200)||(1686301-1686349)
[»] scaffold0867 (1 HSPs)
scaffold0867 (145-214)||(4671-4740)
[»] chr1 (5 HSPs)
chr1 (146-227)||(39379050-39379131)
chr1 (146-214)||(21855385-21855453)
chr1 (149-214)||(4014967-4015032)
chr1 (145-214)||(50645487-50645556)
chr1 (146-214)||(4570927-4570995)
[»] scaffold0097 (1 HSPs)
scaffold0097 (146-193)||(16395-16442)
[»] chr8 (2 HSPs)
chr8 (145-227)||(27618490-27618572)
chr8 (148-200)||(29390288-29390340)
[»] scaffold0064 (1 HSPs)
scaffold0064 (147-212)||(24206-24271)
[»] scaffold0649 (1 HSPs)
scaffold0649 (146-222)||(5438-5514)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18909006 - 18908785
Alignment:
Q  19 gatttggctaaagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaat 118  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18909006 gatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtctat 18908907  T
Q  119 gtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 218  Q
    |||||||||||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18908906 gtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 18908807  T
Q  219 aaatcttcatattgatcatggc 240  Q
    |||||||||||||||| |||||    
T  18908806 aaatcttcatattgattatggc 18908785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18920962 - 18920741
Alignment:
Q  19 gatttggctaaagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaat 118  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  18920962 gatttggttacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtatat 18920863  T
Q  119 gtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 218  Q
    |||||||||||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18920862 gtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 18920763  T
Q  219 aaatcttcatattgatcatggc 240  Q
    |||||||||||||||| |||||    
T  18920762 aaatcttcatattgattatggc 18920741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18913754 - 18913533
Alignment:
Q  19 gatttggctaaagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaat 118  Q
    |||||||||| ||||||||| |  || ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||    
T  18913754 gatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagcaccacccgttgaaccgtctgttagtgtgttgatggattgtctat 18913655  T
Q  119 gtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18913654 gtttttctcaccgtttcaggggaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttca 18913555  T
Q  219 aaatcttcatattgatcatggc 240  Q
    |||||||||||||||| |||||    
T  18913554 aaatcttcatattgattatggc 18913533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 25377072 - 25377142
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||  | ||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 25377142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 14514898 - 14514968
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||| ||||||||||||| |||   |||||||||||| |||| ||||||||||||||||| ||||||||||    
T  14514898 ccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagtt 14514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 22051812 - 22051731
Alignment:
Q  153 tatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 234  Q
    |||||||| |||| || ||| |||||||||||| | ||||||||||||  |||||||||||| ||| |||||||| ||||||    
T  22051812 tatatggaggatgttgaaatgtggagttcaagaatattggactcaatttttcaaaattagttatcagaatcttcaaattgat 22051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 554468 - 554544
Alignment:
Q  138 gggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| |||| || |||||||| | ||||| |||| ||||||| ||||||||||||||||||| || ||||||||||    
T  554468 gggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagtt 554544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 20712603 - 20712556
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 193  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  20712603 attttgttatatggaagatgagggaatttgcagttgaagagtcttgga 20712556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 20975557 - 20975612
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    ||||||||||||||| | |||| ||||||||||||| |||| ||||||| ||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt 20975612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 20980604 - 20980674
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtttt 216  Q
    |||||||||||||||| ||||  |||||| ||||| |||||||||||||| | ||||| ||| ||| ||||    
T  20980604 attttgttatatggaaaatgacagaatttagagttgaagagtcttggactaagttccttaaatttaatttt 20980674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 10205515 - 10205462
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    ||||||||||||||||||||||  || | ||| ||| |||||||||||||||||    
T  10205515 cattttgttatatggaagatgactgagtatggtgttgaagagtcttggactcaa 10205462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 20967700 - 20967776
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaat 222  Q
    |||||||||||||| | |||| | ||||| ||| | |||||||||||||| | ||||||||| |||| | |||||||    
T  20967700 attttgttatatggcaaatgacgaaatttagagctgaagagtcttggactaagttcctcaaatttagctgtcaaaat 20967776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 7938 - 8155
Alignment:
Q  23 tggctaaagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgttt 122  Q
    |||||| |||||||| | |||| ||||||||||| | ||||||||||||||||||||||||||| || ||||||| ||| |||||| || ||| ||||||    
T  7938 tggctacagagacatttaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgttt 8037  T
Q  123 ttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaat 222  Q
    |||||||||||||| ||||| |||||||||| |||||| |||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||  ||    
T  8038 ttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggat 8137  T
Q  223 cttcatattgatcatggc 240  Q
    ||||| |||||| |||||    
T  8138 cttcaaattgattatggc 8155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 12734983 - 12734766
Alignment:
Q  23 tggctaaagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgttt 122  Q
    |||||| |||||||| | |||| ||| ||||||| | ||||||||||||| ||||||||||||| || ||||||| ||| ||||||||| ||| ||||||    
T  12734983 tggctacagagacatttaggcagttgttgccacccaacggttttgttgaaataccacctgttgagccatctgttactgtattgatggatcgtctatgttt 12734884  T
Q  123 ttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaat 222  Q
    |||||||||||||| ||||| |||||||||| |||||| |||| ||||||| ||||||||||| ||||||| |||||| |||||||||||||||||  ||    
T  12734883 ttctcaccgtttcaagggaacccattttgttttatggatgatgttggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggat 12734784  T
Q  223 cttcatattgatcatggc 240  Q
    ||||| |||||| |||||    
T  12734783 cttcaaattgattatggc 12734766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 32579017 - 32578841
Alignment:
Q  64 tttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaaga 163  Q
    ||||||||||||||||| ||||| ||  |||||| ||||||||||||||||| |||||||||||||||||||| ||  | |||||||||| |||||| ||    
T  32579017 tttgttgaagtaccaccggttgagccagctgttactgtgttgatggattgtctatgtttttctcaccgtttcaaggagacccattttgttttatggatga 32578918  T
Q  164 tgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggc 240  Q
    ||||||| |  |||||||| ||||||||||||||||||||||| |||||||||||  | ||||| |||||| |||||    
T  32578917 tgatggagtacggagttcacgagtcttggactcaattcctcaagattagttttcaggaccttcaaattgattatggc 32578841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 25901363 - 25901281
Alignment:
Q  132 tttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| ||||| |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||  | ||||||||||    
T  25901363 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 25901281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 25915381 - 25915299
Alignment:
Q  132 tttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| ||||| |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||  | ||||||||||    
T  25915381 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 25915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 3625740 - 3625815
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||| | |||| | ||||||| ||| ||||||||||||||||||| || |||||||||| ||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttca 3625815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 53)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 19357795 - 19358004
Alignment:
Q  31 gagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcacc 130  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||| || | || | ||| | ||| ||||||||| ||| |||||||||||||     
T  19357795 gagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatttgtaactgtattgatggatagtctatgtttttctcact 19357894  T
Q  131 gtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatat 230  Q
     |||||  || | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||| ||    
T  19357895 atttcaaagggacccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttcaaat 19357994  T
Q  231 tgatcatggc 240  Q
    |||| |||||    
T  19357995 tgattatggc 19358004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19351235 - 19351051
Alignment:
Q  50 tgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattt 149  Q
    |||||||| | |||||||||||||||||||||| ||| || || |||| ||| ||||||||||||| |||||||||||||  | |||   | | ||||||    
T  19351235 tgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattt 19351136  T
Q  150 tgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 234  Q
    |||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  19351135 tgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgat 19351051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 19721939 - 19722088
Alignment:
Q  64 tttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgttt-caggggaatccattttgttatatggaag 162  Q
    ||||||||||||||| ||||||| |||||||||| ||| |||||||| |||| ||||||||||||| |||| |||||  ||    |||||| ||||||||    
T  19721939 tttgttgaagtaccaactgttgagccgtctgttactgtattgatggactgtctatgtttttctcacagttttcagggttat----tttgttttatggaag 19722034  T
Q  163 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtttt 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  19722035 atgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtttt 19722088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 19779520 - 19779696
Alignment:
Q  64 tttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaaga 163  Q
    |||||||| |||||||||||||| ||  |||||| ||| ||||||||||||| ||||||||||||||||| || ||  | |||||||||| |||||  ||    
T  19779520 tttgttgatgtaccacctgttgatccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttga 19779619  T
Q  164 tgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggc 240  Q
    ||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||  | ||||| |||||| |||||    
T  19779620 tgatggagtacggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggc 19779696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 19887863 - 19887687
Alignment:
Q  64 tttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaaga 163  Q
    |||||||| |||||||||||||| ||  |||||| ||| ||||||||||||| ||||||||||||||||| || ||  | |||||||||| |||||  ||    
T  19887863 tttgttgatgtaccacctgttgatccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttga 19887764  T
Q  164 tgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggc 240  Q
    ||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||  | ||||| |||||| |||||    
T  19887763 tgatggagtacggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggc 19887687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 19344646 - 19344565
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 226  Q
    ||||||||||||||| |||||||||||||||||||| || | |||||||||||||| || |||||||||||||| |||||||    
T  19344646 cattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 19344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 660916 - 660836
Alignment:
Q  147 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||| |||||||||| ||| ||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttca 660836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 29454173 - 29454092
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||  ||||||| ||||||||||| |||| ||||||||||||||| | |||||||||| |||| |||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttca 29454092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 22028626 - 22028702
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaa 220  Q
    |||||||||||||||||| |||| ||| | ||||||| ||||||||||||||||||| || || |||||||||||||    
T  22028626 ccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttcaaa 22028702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 14076677 - 14076759
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||| ||||||||| | |||| ||||||||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 14386705 - 14386787
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||| ||||||||| | |||| ||||||||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14386787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 22063641 - 22063710
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  22063641 cattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagtt 22063710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 19604527 - 19604465
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||| |||||| ||||||||||||| |||| || |||||||||||||| ||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 12819986 - 12819905
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||| ||||| |||||| ||||||||||||| || | || |||||||||||||| ||||| |||| ||| ||||||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagttgtcagaatcttca 12819905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 22100492 - 22100561
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||| |||||||| | |||| | |||||||||||||||||||||||||||| ||  ||||||||||||    
T  22100492 cattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 36263053 - 36263134
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||||||||| || | ||| |||| | | ||||||||||    
T  36263053 attttgttatatggaagatggaagaatttggagttgaagagtcttggactcaactcattaaagttagctatgaaaatcttca 36263134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 6864860 - 6864796
Alignment:
Q  163 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||| ||||||||||||| |||||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  6864860 atgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttca 6864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 15572012 - 15571884
Alignment:
Q  99 tgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    |||||| ||||||||||  ||||||||| |   ||||| ||||| ||||||||| || ||| | |||| ||| ||||||||| |||||||||||  ||||    
T  15572012 tgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaa 15571913  T
Q  199 ttcctcaaaattagttttcaaaatcttca 227  Q
    ||||  |||||||||| |  |||||||||    
T  15571912 ttccataaaattagttattcaaatcttca 15571884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 22080867 - 22080959
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcat 237  Q
    |||||| |||||||| | |||| | |||||||||||||||||||||||||||  ||  |||||||||||| ||| ||||| || || ||||||    
T  22080867 cattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagttatcagaatctccaaatagatcat 22080959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 29922063 - 29921983
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 226  Q
    |||||||||||||| |||||| | ||||||| | | |||| |||||| |||||||||| | |||||||| |||||||||||    
T  29922063 attttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattccttagaattagttatcaaaatcttc 29921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 36260253 - 36260333
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 226  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| |||| |  | |||||||| | |||||||||||    
T  36260253 attttgttatatggaagatggaagaatttggagttgaagagtcttggattcaacttattaaaattagctatcaaaatcttc 36260333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 16839448 - 16839397
Alignment:
Q  149 ttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    ||||||||||||||||||  || | |||||||||||||||||||||||||||    
T  16839448 ttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16839397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 16846531 - 16846480
Alignment:
Q  149 ttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    ||||||||||||||||||  || | |||||||||||||||||||||||||||    
T  16846531 ttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 19326056 - 19325974
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||| | |||  ||||||||||||  || | ||||||||||||||| ||||||| |||||||| ||| ||||    
T  19326056 cattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagttttcagaatgttca 19325974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 20058128 - 20058046
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||||| |||  ||||||  ||||| |||||||||||  |||||| || |||||||||| | ||||||||||    
T  20058128 cattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttatgaaaatcttca 20058046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 26256775 - 26256829
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    |||||||| ||||| |||||| ||| | |||||||||||||||||||||||||||    
T  26256775 attttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaatt 26256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 29874517 - 29874599
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 234  Q
    |||||||| | |||| | ||||||| ||| |||| |||||||||| ||| || |||||||||| |||||||||||| ||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaaattgat 29874599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 20414882 - 20414939
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcct 203  Q
    ||||| ||||||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  20414882 attttattatatggaagatgatgaaatttggagatgacaagtcttggactcaattcct 20414939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 22021390 - 22021455
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaat 209  Q
    |||||| ||||||||| |||||||||| | ||||||| |||| |||||||||||||| || |||||    
T  22021390 ccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 22070110 - 22070179
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||| |||||||| | |||| | |||||||||||||||||||||||||||  ||  ||||||||||||    
T  22070110 cattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagtt 22070179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 29431071 - 29430990
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||  ||||||| ||||||| | | |||| |||||||| |||||||| |||||||||| |||  |||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttca 29430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 29859454 - 29859535
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||| ||||||||| |||||| | ||||||||||| |||| |||||||| | ||| || |||||||||| ||| ||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttca 29859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 29899374 - 29899451
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatc 223  Q
    |||||||||||||| |||||| | ||||||| ||| ||||||| |||||||||||  | ||||||||||  |||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagttgccaaaatc 29899451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 24002228 - 24002280
Alignment:
Q  175 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||||||||||||||||||||| || || ||||||| ||| ||||||||    
T  24002228 ggagttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24002280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 9807824 - 9807871
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 193  Q
    |||| ||||||||| |||||| ||||||||||||| ||||||||||||    
T  9807824 atttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 35205994 - 35205915
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatctt 225  Q
    |||||||||||||||||||||  |||||||||  | |  ||||||||||||||||||| ||| |||| | ||| ||||||    
T  35205994 attttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaatttagctatcacaatctt 35205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 18514851 - 18514789
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||||| |||   |||||||||||| || | ||||||||||||||||| ||||||||||    
T  18514851 ttatatggaaaatggacgaatttggagttgaaaactcttggactcaattccttaaaattagtt 18514789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 18952977 - 18952907
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||| | |||||| |||||| ||||||||||||| |  |||| |||||||| ||||| ||||||||||    
T  18952977 ccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtt 18952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 18983024 - 18982954
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||| | |||||| |||||| ||||||||||||| |  |||| |||||||| ||||| ||||||||||    
T  18983024 ccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18982954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 18997670 - 18997600
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||| | |||||| |||||| ||||||||||||| |  |||| |||||||| ||||| ||||||||||    
T  18997670 ccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 19597717 - 19597659
Alignment:
Q  154 atatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 212  Q
    |||||| |||||| |||||||| |||| ||||||| |||||||| || |||||||||||    
T  19597717 atatggcagatgaaggaatttgaagttgaagagtcatggactcagtttctcaaaattag 19597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 21218778 - 21218712
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 212  Q
    |||| ||||||||| | |||| ||||||||||| | |  ||||||||||||||||||||||| ||||    
T  21218778 atttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttag 21218712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 22037038 - 22037140
Alignment:
Q  98 gtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactca 197  Q
    ||||||||||||||||    ||||||||||| | | ||| |  || |||||| |||||||||||||||||||| | ||||| | | || |||||||||||    
T  22037038 gtgtgttgatggattgcatttgtttttctcatcttgtcaagaaaacccatttggttatatggaagatgatggattatggagatgatgattcttggactca 22037137  T
Q  198 att 200  Q
    |||    
T  22037138 att 22037140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 24031257 - 24031307
Alignment:
Q  148 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    ||||| |||||||| ||||  || |||||||||||||||||||||||||||    
T  24031257 tttgtcatatggaaaatgaatgagtttggagttcaagagtcttggactcaa 24031307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 20338923 - 20338976
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    |||||||| |||||||| |||| |||||| |||||| |||| ||||||||||||    
T  20338923 cattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaa 20338976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 22039955 - 22040020
Alignment:
Q  155 tatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaa 220  Q
    ||||||||||||  || | ||||||| ||||||||||||||||||| || || |||| ||||||||    
T  22039955 tatggaagatgacagattatggagttgaagagtcttggactcaattacttaagattaattttcaaa 22040020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 24010415 - 24010464
Alignment:
Q  178 gttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||||||||||| || || ||||||| ||| ||||||||    
T  24010415 gttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24010464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 26217968 - 26218021
Alignment:
Q  147 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    ||||||| ||||| |||||| ||| | ||||||||||||||||||| |||||||    
T  26217968 ttttgttttatggcagatgaaggagtatggagttcaagagtcttggtctcaatt 26218021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 36255390 - 36255447
Alignment:
Q  170 aatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||| ||||||||||||||||| || | ||| |||| | ||||||||||||    
T  36255390 aatttggagttgaagagtcttggactcaactcattaaagttagctatcaaaatcttca 36255447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 19637287 - 19637219
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| |||||||| | |||| ||||||||||||||||||||| |||| ||   |||| ||||||||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaagagtcgtggattcggctccttaaaattagtt 19637219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 29106814 - 29106866
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    |||||||| ||||| |||||| | ||||||| ||| |||||||||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaa 29106866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 29445726 - 29445646
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 226  Q
    ||||| |||||||| |||||| |||||| || ||| |||| |||||||||||||| || ||||| | | | ||||||||||    
T  29445726 attttcttatatggcagatgaaggaattaggggttgaagactcttggactcaatttctaaaaatcaatctacaaaatcttc 29445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 29867236 - 29867324
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 234  Q
    ||||| |||||||| | |||| | |||| || ||| |||| ||||||||||||||||| | ||||||||  || |||||||| ||||||    
T  29867236 attttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagttaccataatcttcaaattgat 29867324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 14749315 - 14749463
Alignment:
Q  64 tttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaaga 163  Q
    ||||||||||||||| ||||||| || |||||||   | ||||||||||||| ||||||||||||||||||||  |  | |||||||||| |||||| ||    
T  14749315 tttgttgaagtaccatctgttgagccatctgttaccattttgatggattgtctatgtttttctcaccgtttcaaagagacccattttgttttatggagga 14749414  T
Q  164 tgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14749415 tgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 6921422 - 6921352
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  6921422 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 20770650 - 20770731
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||||||||| | |||| |||||||||| || ||||||| |||| ||||||||| |||||||||| ||| ||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttca 20770731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 24950214 - 24950150
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 210  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||    
T  24950214 attttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 6935290 - 6935220
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| |||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  6935290 ccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 6935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 6954591 - 6954518
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 217  Q
    |||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  6954591 ccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 6954518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 24254543 - 24254426
Alignment:
Q  99 tgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaa 198  Q
    |||||||||||| || |  ||||||||||||  | ||| | |||  ||||||||||||||| |||||  ||||||||||||  || | ||||||||||||    
T  24254543 tgtgttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactcaa 24254444  T
Q  199 ttcctcaaaattagtttt 216  Q
    ||| ||||||| ||||||    
T  24254443 ttcatcaaaatcagtttt 24254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 33576172 - 33576221
Alignment:
Q  148 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 197  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  33576172 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 33576221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 17369681 - 17369745
Alignment:
Q  163 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||| ||||||||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  17369681 atgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 17369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 6947933 - 6947882
Alignment:
Q  163 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  6947933 atgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 6947882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 5979029 - 5979078
Alignment:
Q  148 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 197  Q
    ||||||||||||  ||||| ||| |||||||| |||||||||||||||||    
T  5979029 tttgttatatggctgatgaaggagtttggagtccaagagtcttggactca 5979078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 29597650 - 29597544
Alignment:
Q  118 tgtttttctcaccgtttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 217  Q
    ||||||||||||| ||||| || ||  ||||||||||||||| | ||||| |||||||||||| || | ||||||||||||||||| |||||||||||||    
T  29597650 tgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttc 29597551  T
Q  218 aaaatct 224  Q
    |||||||    
T  29597550 aaaatct 29597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 29647675 - 29647754
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatct 224  Q
    ||||||||||||||| | ||||| ||||||||| || || | ||||||||||||||||| ||||||||||||||||||||    
T  29647675 cattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcaaaatct 29647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 28763977 - 28763912
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaat 209  Q
    ||||||||||||||||||||||| | ||||||||||| || ||||||||| || ||||||||||||    
T  28763977 ccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaat 28763912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 29642358 - 29642437
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatct 224  Q
    ||||| ||||||||| | ||||| ||||||||| || || | ||||||||||||||||| |||||||||||||| |||||    
T  29642358 catttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcagaatct 29642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 23086784 - 23086833
Alignment:
Q  148 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 197  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactca 23086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 24330969 - 24330901
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||||||||| |||||| ||||||||| ||| |||| |||||||||||| |||| ||| ||||||    
T  24330969 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtt 24330901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 18964894 - 18964819
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||| | |||| ||||||||||||| |||| |||||||||||||| || |||||| ||| ||| ||||||||    
T  18964894 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 18964819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 42298111 - 42298177
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 212  Q
    |||| ||||||||||||||||| |||||||||| | || | |||||||||||||||| |||| ||||    
T  42298111 atttagttatatggaagatgatagaatttggagatgaaaattcttggactcaattccacaaagttag 42298177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 53774839 - 53774919
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatctt 225  Q
    ||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||    
T  53774839 cattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 11971053 - 11970971
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||| | |||| ||||||||||||  ||||||||||||||||||| || | |||||||| ||| ||||||||    
T  11971053 cattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttca 11970971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 3565744 - 3565825
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||| || |||||||||| |||  |||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 35767017 - 35767098
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 226  Q
    |||||||||||||||||||||   |||||||||||| |||||||||||| |||| |||| |||||||  | |||||||||||    
T  35767017 cattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaattaactatcaaaatcttc 35767098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 53790552 - 53790634
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||| |||||||||||||||   |||||||| || || | |||||||||||||| || |||||||||||||| ||||||||    
T  53790552 cattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttca 53790634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 3557726 - 3557807
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||| |||||||| | |||| ||||||||| ||| ||||||||||||||||||| || |||||||||| |||  |||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 11981754 - 11981665
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 234  Q
    ||||||||||||||| | |||| ||||||||||||  ||||||| ||||||| ||| || |||||||||| ||  |||||||| ||||||    
T  11981754 cattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgat 11981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 6113096 - 6113157
Alignment:
Q  163 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatct 224  Q
    |||||||||||||||||| |||||||||||||||| |||||   |||||||| |||| ||||    
T  6113096 atgatggaatttggagttaaagagtcttggactcagttccttcgaattagttatcaacatct 6113157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 19361442 - 19361523
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||||||||    |||||| |||| |||||| |||||||||| || | |||||||| | ||||||||||||    
T  19361442 attttgttatatggaagatggaataatttgaagttgaagagttttggactcaactcattaaaattaggtatcaaaatcttca 19361523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 10553630 - 10553548
Alignment:
Q  132 tttcaggggaatccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||| ||||| |||| ||||| ||||||| ||||  || |||||||||||||||||||||| ||| || || || |||||||    
T  10553630 tttcaagggaagccatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgcttaacattagtt 10553548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 19359160 - 19359218
Alignment:
Q  169 gaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    |||||||||||| ||||||||||||||||| |  | |||||||| | ||||||||||||    
T  19359160 gaatttggagttgaagagtcttggactcaacttattaaaattaggtatcaaaatcttca 19359218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 3561004 - 3560947
Alignment:
Q  170 aatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||| ||| ||||||||||||||||||| || |||||||||| |||  |||||||    
T  3561004 aatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3560947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 8443525 - 8443456
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||| |||||| ||| |||||| ||| ||||||||||| |||||||||| ||||||  | ||||||||||    
T  8443525 cattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 8443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 837774 - 837830
Alignment:
Q  144 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    |||||||||||||||| | |||| | | ||||| |||||||||||||||| ||||||    
T  837774 ccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaatt 837830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 1686349 - 1686301
Alignment:
Q  152 ttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    |||||||| |||||| ||||||||| ||| | |||||||||||||||||    
T  1686349 ttatatggcagatgaaggaatttggcgttgacgagtcttggactcaatt 1686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 4740 - 4671
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||| |||||||| | |||| | |||||||||||||||||||||||||||| ||  ||||||||||||    
T  4740 cattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 39379131 - 39379050
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||| || ||||| |||| |||  |||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttca 39379050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 21855453 - 21855385
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||||||||| |||||| ||||||||| ||| |||| |||||||||||| |||| ||| ||||||    
T  21855453 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtt 21855385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 4015032 - 4014967
Alignment:
Q  149 ttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||||||| |||||| | ||||||| ||| |||| ||||||||||||||||| ||| ||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtt 4014967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 50645556 - 50645487
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    ||||||||||| ||| | |||| ||| |||||||||||||||||||||| ||||||  | ||||||||||    
T  50645556 cattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 50645487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4570927 - 4570995
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 214  Q
    |||||||||||||| | |||| | ||||||| ||| |||| |||||||||||||| || ||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 4570995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 16442 - 16395
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 193  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  16442 attttgttatatggaagatgagggaatttgcagttgaagagtcttgga 16395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 27618490 - 27618572
Alignment:
Q  145 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 227  Q
    ||||||||||||||||| |||   ||| | |||||| |||||||||||||||| || || ||| |||||| ||| ||||||||    
T  27618490 cattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagttatcagaatcttca 27618572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  148 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaatt 200  Q
    |||||||||||| |||||| ||||||||||||| |||| ||||| ||| ||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 24206 - 24271
Alignment:
Q  147 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 212  Q
    ||||||||||||||||||||  |||| ||||| | || ||||||| ||||||||||| ||| ||||    
T  24206 ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaatttag 24271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 5438 - 5514
Alignment:
Q  146 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaat 222  Q
    |||||||||||||| ||||||   ||||| ||||| ||||||||||||||   ||||| ||| |||||| |||||||    
T  5438 attttgttatatggcagatgaaaaaatttagagttgaagagtcttggactatgttccttaaatttagttatcaaaat 5514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University