View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_38 (Length: 240)
Name: NF6510_high_38
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 54897484 - 54897702
Alignment:
| Q |
1 |
ttaggtcatttattaacactttccttaaaattacacaaaatcaaaattcattgtattttacatcaaaacttgaaggatcttgttaacttataatttgatg |
100 |
Q |
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| T |
54897484 |
ttaggtcatttattaacactttccttaaaattacacaaaatcaaaattcattgtattttacatcaaaacttgaaggatcttgttaacttataatttgatg |
54897583 |
T |
|
| Q |
101 |
gccatgttnnnnnnnttcaaacgtagcaattttgcactcaacaatgatattttaacnnnnnnngtcnnnnnnnnntgatattttaacttttagaaagtta |
200 |
Q |
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| T |
54897584 |
gccatgttaaaaaaattcaaaagtagcaattttgcactcaacaatgatattttaactttttttgtcaagaaagaatgatattttaacttttaaaaagtta |
54897683 |
T |
|
| Q |
201 |
gatgaacgattttagagac |
219 |
Q |
| |
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|||||||||||||||||| |
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| T |
54897684 |
aatgaacgattttagagac |
54897702 |
T |
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