View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_4 (Length: 575)
Name: NF6510_high_4
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 338 - 574
Target Start/End: Complemental strand, 8544780 - 8544544
Alignment:
| Q |
338 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggtaacttcattcttccctatcatcttcttttc |
437 |
Q |
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| T |
8544780 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggttacttcattcttccctatcatcttcttttc |
8544681 |
T |
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| Q |
438 |
catcaagtccaaacattttgttgcttgaattaaattgtgggtttttgtgcaggaccttaaaataccattgtagatagggagaagaggatagaattgcgga |
537 |
Q |
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| T |
8544680 |
catcaagtccaaacattttgttgcttgaattaaattgtgggttttagtgcaggaccttaaaataccattgtagatagggagaagtggatagaattgcgga |
8544581 |
T |
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| Q |
538 |
gtttcggcaagaaaatccatgatgctgaaagcctctt |
574 |
Q |
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| T |
8544580 |
gtttcggaaagaaaatccatgatgctgaaagcctctt |
8544544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 338 - 574
Target Start/End: Complemental strand, 8610019 - 8609783
Alignment:
| Q |
338 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggtaacttcattcttccctatcatcttcttttc |
437 |
Q |
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| T |
8610019 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggttacttcattcttccctatcatcttcttttc |
8609920 |
T |
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| Q |
438 |
catcaagtccaaacattttgttgcttgaattaaattgtgggtttttgtgcaggaccttaaaataccattgtagatagggagaagaggatagaattgcgga |
537 |
Q |
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| T |
8609919 |
catcaagtccaaacattttgttgcttgaattaaattgtgggttttagtgcaggaccttaaaataccattgtagatagggagaagtggatagaattgcgga |
8609820 |
T |
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| Q |
538 |
gtttcggcaagaaaatccatgatgctgaaagcctctt |
574 |
Q |
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| T |
8609819 |
gtttcggaaagaaaatccatgatgctgaaagcctctt |
8609783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 8544956 - 8544779
Alignment:
| Q |
11 |
agtgatgatttgccatcctatgaataacaataataataagaacatgcatcttggtccaagtgattagcaattttcacattgaatcacaaattcgataaac |
110 |
Q |
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| T |
8544956 |
agtgatgatttcccatcctatgaataacaataataataagaacatgcatcttggtccaagtgattagcaattttcacattgaatcacaaattcgataaac |
8544857 |
T |
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| Q |
111 |
atgaaagttctttcagacataataaggacccgttggttttagaaaaccttttgttgttttcaaaatttagctaagaaa |
188 |
Q |
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| T |
8544856 |
atgaaagttctttcagacataataaggacccattggttttagaaaaccttttgttgttttcaaaatttagctacgaaa |
8544779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 8610195 - 8610018
Alignment:
| Q |
11 |
agtgatgatttgccatcctatgaataacaataataataagaacatgcatcttggtccaagtgattagcaattttcacattgaatcacaaattcgataaac |
110 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8610195 |
agtgatgatttcccatcctatgaataacaataataataagaacatgcatcttggtccaagtgattagcaattttcacattgaatcacaaattcgataaac |
8610096 |
T |
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| Q |
111 |
atgaaagttctttcagacataataaggacccgttggttttagaaaaccttttgttgttttcaaaatttagctaagaaa |
188 |
Q |
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| T |
8610095 |
atgaaagttctttcagacataataaggacccattggttttagaaaaccttttgttgttttcaaaatttagctacgaaa |
8610018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 380 - 563
Target Start/End: Complemental strand, 25015619 - 25015436
Alignment:
| Q |
380 |
tgcacacctggagaagcgcagtataggtaacttcattcttccctatcatcttcttttccatcaagtccaaacattttgttgcttgaattaaattgtgggt |
479 |
Q |
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|||| |||| |||||| |||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||| | |
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| T |
25015619 |
tgcataccttgagaagtgcagtataagtaacttcactctttcctatcatctgtttttccatcaagtccaaacattttcttgcttgaactaaattctggat |
25015520 |
T |
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| Q |
480 |
ttttgtgcaggaccttaaaataccattgtagatagggagaagaggatagaattgcggagtttcggcaagaaaatccatgatgct |
563 |
Q |
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| T |
25015519 |
ttctgtgtaggaccttaaaatactattgtacagtgggagaactggatagaaatgccgactttctgcaagaaaatccatgatgct |
25015436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 25015878 - 25015728
Alignment:
| Q |
112 |
tgaaagttctttcagacataataaggacccgttggttttagaaaaccttttgttgttttcaaaatttagctaagaaaagaatgcaaacaacttcttatga |
211 |
Q |
| |
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||||||||||||||||| | |||| ||| |||||||||||||||| |||| |||||||||| |||||| |||||| |||||||||||||| |||| |
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| T |
25015878 |
tgaaagttctttcagacttgataacaacctgttggttttagaaaactttttcctgttttcaaattttagcgcagaaaacaatgcaaacaactttttattg |
25015779 |
T |
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| Q |
212 |
ttctcattgttttggtacttttgaaattaaaactggaacaggaaatggaaa |
262 |
Q |
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|||||| ||||||| || ||||| | || |||| ||||||||||||||| |
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| T |
25015778 |
ttctcactgttttgatatttttgtagtttttactgcaacaggaaatggaaa |
25015728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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