View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6510_high_41 (Length: 231)
Name: NF6510_high_41
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_41 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 54774651 - 54774421
Alignment:
| Q |
1 |
tcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttattgtgtatctgccaacaccattttgagccatctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54774651 |
tcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttattgtgtatctgccaacaccattttgagccatctaa |
54774552 |
T |
|
| Q |
101 |
ttcatccaaggaaatataattagcttattgtttttctttgctttattnnnnnnnnntattatgtcacaaaggaaattcatcattttgacaacaaaactac |
200 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54774551 |
tccatccaaggaaatataattaccttattgtttttctttgctttattaaaaaaaaaaattatgtcacaaacgaaattcatcattttgacaacaaaactac |
54774452 |
T |
|
| Q |
201 |
cttcaagatctctggatcattccatggaccc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
54774451 |
cttcaagatctctggatcattccatggaccc |
54774421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5328497 - 5328263
Alignment:
| Q |
1 |
tcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttat----tgtgtatctgccaacaccattttgagccat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5328497 |
tcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttatatattgtgtatctgccaacaccattttgagccat |
5328398 |
T |
|
| Q |
97 |
ctaattcatccaaggaaatataattagcttattgtttttctttgctttattnnnnnnnnntattatgtcacaaaggaaattcatcattttgacaacaaaa |
196 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5328397 |
ctaatccatccaaggaaatataattaccttattgtttttctttgctttattaaaaaaaaaaattatgtcacaaacgaaattcatcattttgacaacaaaa |
5328298 |
T |
|
| Q |
197 |
ctaccttcaagatctctggatcattccatggaccc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328297 |
ctaccttcaagatctctggatcattccatggaccc |
5328263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 26639868 - 26639835
Alignment:
| Q |
194 |
aaactaccttcaagatctctggatcattccatgg |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
26639868 |
aaactaccttcaagatttctggatcattccatgg |
26639835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University