View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_45 (Length: 212)
Name: NF6510_high_45
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4743350 - 4743160
Alignment:
| Q |
1 |
aagttgaagggcactgcagctgatctcatcttagaggaagaaagttggttagaaacttatagtccagtatgtgaagcaataaactcttcactagttaaat |
100 |
Q |
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| T |
4743350 |
aagttgaagggcactgcagctgatctcatcttagaggaagaaagttgtttagaaactttgagtccagtatgtgaagcaagaaactcatcactagttaaat |
4743251 |
T |
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| Q |
101 |
cagaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctctttgaatatcttttt |
191 |
Q |
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| T |
4743250 |
cagaatattgatttaggcccagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattatttttgaatatcctttt |
4743160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 4735416 - 4735228
Alignment:
| Q |
3 |
gttgaagggcactgcagctgatctcatcttagaggaagaaagttggttagaaacttatagtccagtatgtgaagcaataaactcttcactagttaaatca |
102 |
Q |
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| T |
4735416 |
gttgaagggtattgcaactgatctcatcttggagtcagaaagttggtctgaaactttgaatccagtatgtgaagcaataaactcttcactggttaaatca |
4735317 |
T |
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| Q |
103 |
gaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctctttgaatatcttttt |
191 |
Q |
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| T |
4735316 |
gaatatcgatttaggccaagtttgtaactcttgttaccaacattgttgaaattctcgatatattccaaattctccttgaatattttttt |
4735228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 28284810 - 28284906
Alignment:
| Q |
81 |
aaactcttcactagttaaatcagaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctct |
177 |
Q |
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| T |
28284810 |
aaactcttcatttgttaaatcagagaattgattcagacccaacttataagtctgttttccagcacggttaaaattctctatgtattctaaattctct |
28284906 |
T |
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