View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_high_5 (Length: 518)
Name: NF6510_high_5
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 4570198 - 4569714
Alignment:
| Q |
11 |
cacagacaaagcaaagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaatttaaaatgttgaaaattaaagaac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
4570198 |
cacagacaaagcaaagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaa------atgttgaaaatcaaagaac |
4570105 |
T |
|
| Q |
111 |
aaattctcatttttccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacaccgaccgcaacctcaatacaaccatacgcta |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4570104 |
aaactctcatttttccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacatcgaccgcaacctcaatacaaccatacgcta |
4570005 |
T |
|
| Q |
211 |
cctccgcgcttacacagnnnnnnnnnnnnnnnnnnntgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgcc |
310 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4570004 |
cctccgcgcttacacagccaccaccacccaccaccatgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgcc |
4569905 |
T |
|
| Q |
311 |
gccacactccgctaccacaaccaccgcctcgaactcttctgctccaaaagccaagacagcgttcctctcattcacgccaccgtagacatcactctcgaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4569904 |
gccacactccgctaccacaaccaccgcctcgaactcttctgctccaaaagccaagacagcgttcctctcatccacgccaccgtagacatcactctcgaat |
4569805 |
T |
|
| Q |
411 |
ccgtaaactacctcgacgacgacccatcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatg |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569804 |
ccgtaaactacctcgacgacgacccatcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatg |
4569714 |
T |
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