View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6510_low_10 (Length: 444)
Name: NF6510_low_10
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 722798 - 722381
Alignment:
| Q |
15 |
cttaataatacggatgattcctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaatt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
722798 |
cttaataatacggatgattcctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaatt |
722699 |
T |
|
| Q |
115 |
ggaaacacaaaaacatctcctttgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
722698 |
ggaaacacaaaaacatctcctttgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaaca |
722599 |
T |
|
| Q |
215 |
ccataagtatttcagtggctctagggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcc |
314 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
722598 |
ccataagtatctcagtggctctagggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcc |
722499 |
T |
|
| Q |
315 |
taatatctcattaactgtcactaatgtcacttgagaaccaactggactcgatacaactccttcttttactgagtaaaagaaatcatctgctgtaacaagt |
414 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
722498 |
taatatctcattaactgtgactaatgtcacttgagtaccaactggactcgatacaactccttcttttactgagaaaaagaaatcatctgctgtaacaagt |
722399 |
T |
|
| Q |
415 |
tttggatctttgcagtat |
432 |
Q |
| |
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|||||||||||||||||| |
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| T |
722398 |
tttggatctttgcagtat |
722381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 54 - 426
Target Start/End: Complemental strand, 716875 - 716506
Alignment:
| Q |
54 |
tccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctcctttgttgagatcttttgta |
153 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
716875 |
tccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataagaccaattggaaacacaaagacatctcctttgttaagaacttttgta |
716776 |
T |
|
| Q |
154 |
atgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaacaccataagtatttcagtggctctagggtgagtgtgtggag |
253 |
Q |
| |
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||| || | ||||| | ||||||||| ||| || |||||||||||||| || ||||| |||||||| |||| ||||||||||||| ||||||| |
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| T |
716775 |
atgaga---cggttttctgggttagaagtaacaaaaccgacattgagagtaccctccaacactataagtatctcagctgctctagggtgagcatgtggag |
716679 |
T |
|
| Q |
254 |
gatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcctaatatctcattaactgtcactaatgtcacttgagaacc |
353 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||| |
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| T |
716678 |
gatttagaccctttggtgcaaaatcaatacgagcaaaagagataccaagagtatttaatcctaatatctcactaactgtgggtagtgtcacttgcgaacc |
716579 |
T |
|
| Q |
354 |
aactggactcgatacaactccttcttttactgagtaaaagaaatcatctgctgtaacaagttttggatctttg |
426 |
Q |
| |
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|| | |||| |||| | ||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
716578 |
aagttgacttgatatgttttcttcttttattgagaaaaagaaatcatctggtgtaacaagttttggttctttg |
716506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 428
Target Start/End: Original strand, 702401 - 702792
Alignment:
| Q |
34 |
cctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctc |
133 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| ||||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
702401 |
cctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctc |
702500 |
T |
|
| Q |
134 |
ctttgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaacaccataagtatttcagtggc |
233 |
Q |
| |
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||||||| || ||||||||||| || | ||||| ||||||||||| ||| || |||| || ||||| |||||||| |||||||| |||||||| |
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| T |
702501 |
ctttgttcagtacttttgtaatgaga---cggttttctggattagaagtaacaaacccgacatatagtgtaccctctaacactataagtatctcagtggc |
702597 |
T |
|
| Q |
234 |
tctagggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcctaatatctcattaactgtc |
333 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| | | ||| |||||||| ||||||||||||| ||| | |||||||| ||||| ||| ||||||||||| |
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|
| T |
702598 |
tctagggtgagtatgtggaggatttagtccccttgatgcgaagtcaatgcgagcaagagagatacctaaagtgtttagtcctagtatatcattaactgta |
702697 |
T |
|
| Q |
334 |
actaatgtcacttgagaaccaactggactcgatacaactccttcttttactgagtaaaagaaatcatctgctgtaacaagttttggatctttgca |
428 |
Q |
| |
|
|| |||||||| ||||| | |||| | ||| |||||||||||||||| |||||||||||| || |||| |||| |||||||| ||||| |
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| T |
702698 |
accggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatttggtgtagcaagctttggatccttgca |
702792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 37 - 429
Target Start/End: Original strand, 717706 - 718095
Alignment:
| Q |
37 |
ggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctcctt |
136 |
Q |
| |
|
|||||||| ||||||| ||||| ||| ||||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
717706 |
ggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctt |
717805 |
T |
|
| Q |
137 |
tgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaacaccataagtatttcagtggctct |
236 |
Q |
| |
|
|||| || ||||||| ||| || | ||||| ||||||||||| ||| || |||| || ||||| |||||||| |||||||| ||||||||||| |
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| T |
717806 |
tgtttagtacttttgttatgaga---cggttttctggattagaagtaacaaacccgacatatagtgtaccctctaacactataagtatctcagtggctct |
717902 |
T |
|
| Q |
237 |
agggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcctaatatctcattaactgtcact |
336 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||| ||| |||||||| ||||||||||||| ||| | |||||||| ||||| ||| ||||||||||| || |
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|
| T |
717903 |
agggtgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagatacctaaagtgtttagtcctagtatatcattaactgtaacc |
718002 |
T |
|
| Q |
337 |
aatgtcacttgagaaccaactggactcgatacaactccttcttttactgagtaaaagaaatcatctgctgtaacaagttttggatctttgcag |
429 |
Q |
| |
|
|||||||| ||||| | |||| | ||| |||||||||||||||| |||||||||||| || |||| |||| |||||||| |||||| |
|
|
| T |
718003 |
ggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcag |
718095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 97 - 428
Target Start/End: Complemental strand, 712974 - 712646
Alignment:
| Q |
97 |
aagtgaatgagaccaattggaaacacaaaaacatctcctttgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacat |
196 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| || | ||||| ||||||||||| ||| || |||| |
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|
| T |
712974 |
aagtgaatgaggccaattggaaacacaaacacatctcctttgttcagtacttttgtaatgaga---cggttttctggattagaagtaacaaacccgacat |
712878 |
T |
|
| Q |
197 |
tgagagtaccatctaacaccataagtatttcagtggctctagggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagac |
296 |
Q |
| |
|
||||||||| || ||||| ||||| || |||||||||||||||||||| ||||||||||||| ||| ||| ||| |||||||| ||||||||||||| |
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|
| T |
712877 |
agagagtaccctccaacactataagaatctcagtggctctagggtgagtatgtggaggatttagtcccctagatgcgaagtcaatgcgagcaagagagat |
712778 |
T |
|
| Q |
297 |
accaagagtgtttaatcctaatatctcattaactgtcactaatgtcacttgagaaccaactggactcgatacaactccttcttttactgagtaaaagaaa |
396 |
Q |
| |
|
||| | |||||||| ||||| ||| ||||||||||| || |||||||| ||||| | |||| | |||| ||||||||| |||||| |||| ||| |
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|
| T |
712777 |
acctaaagtgtttagtcctagtatatcattaactgtaaccggtgtcacttttgaacccagtggatttgatatgtttccttctttcactgagaaaaaaaaa |
712678 |
T |
|
| Q |
397 |
tcatctgctgtaacaagttttggatctttgca |
428 |
Q |
| |
|
|||| || |||| |||| |||||||| ||||| |
|
|
| T |
712677 |
tcatttggtgtagcaagctttggatccttgca |
712646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 421
Target Start/End: Original strand, 710673 - 711054
Alignment:
| Q |
37 |
ggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctcctt |
136 |
Q |
| |
|
|||||||| ||||||| ||||| ||| ||||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
710673 |
ggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctt |
710772 |
T |
|
| Q |
137 |
tgttgagatcttttgtaatgggagtactactttcttgattagaagtataaaagccaacattgagagtaccatctaacaccataagtatttcagtggctct |
236 |
Q |
| |
|
|||| || ||||||| ||| || | ||||| ||||||||||| ||| || |||| ||||||||| || ||||| ||||| || ||||||||||| |
|
|
| T |
710773 |
tgttcagtacttttgtgatgaga---cggttttctggattagaagtaacaaacccgacatagagagtaccctccaacactataagaatctcagtggctct |
710869 |
T |
|
| Q |
237 |
agggtgagtgtgtggaggatttatacccttaggtgcaaagtcaatacgagcaagagagacaccaagagtgtttaatcctaatatctcattaactgtcact |
336 |
Q |
| |
|
||||||||| ||||| ||||||| ||| | | ||| |||||||| ||||||||||||| ||| | |||||||| ||||| ||| |||||||| || || |
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|
| T |
710870 |
agggtgagtatgtgggggatttagtccccttgatgcgaagtcaatgcgagcaagagagatacctaaagtgtttagtcctagtatatcattaaccgtaacc |
710969 |
T |
|
| Q |
337 |
aatgtcacttgagaaccaactggactcgatacaactccttcttttactgagtaaaagaaatcatctgctgtaacaagttttggat |
421 |
Q |
| |
|
|||||||| ||||| | |||| | ||| ||||||||| |||||| |||||||||||| || |||| |||| ||||||| |
|
|
| T |
710970 |
ggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttggat |
711054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 35313663 - 35313619
Alignment:
| Q |
96 |
gaagtgaatgagaccaattggaaacacaaaaacatctcctttgtt |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
35313663 |
gaagtgaatgagaccgattggaaacacaaatacatcacctttgtt |
35313619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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