View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_12 (Length: 438)
Name: NF6510_low_12
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 22778870 - 22778461
Alignment:
| Q |
10 |
agaagcaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaacacatttttgtctgataccga |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22778870 |
agaaacaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaacacatttttgtctgataccaa |
22778771 |
T |
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| Q |
110 |
tatatatgtatgcatgtgtgtgtgtttttgcattccgtcactattatatannnnnnnnaattatgatcggtttgtaaatgttcatgtcgatgtcatgtct |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778770 |
tatataggtatgcatgtgtgtgtgtttttgcattccgtcactattatat--tttttttaattatgatcggtttgtaaatgttcatgtcgatgtcatgtct |
22778673 |
T |
|
| Q |
210 |
agttattgtaccttaattaatgcttcatagatgtcatgctcaattcgcacgattcacttatttcgtcattgaacagatattgagtaatggaaaatacaag |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778672 |
agttattgtaccttaattaatgctttatagatgtcatgctcaattcgcacgattcacttatttcgtcattgaacagatattgagtaatggaaaatacaag |
22778573 |
T |
|
| Q |
310 |
agtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778572 |
agtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatc |
22778473 |
T |
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| Q |
410 |
atatgatagatg |
421 |
Q |
| |
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|||||||||||| |
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| T |
22778472 |
atatgatagatg |
22778461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 279 - 421
Target Start/End: Complemental strand, 22765404 - 22765262
Alignment:
| Q |
279 |
tgaacagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccct |
378 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| | | | |||||| ||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
22765404 |
tgaacagatattgagtaatggaaaatacaaaagtgtagaacacagagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccct |
22765305 |
T |
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| Q |
379 |
cgagatgacgttgaagttgagccctttgatcatatgatagatg |
421 |
Q |
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|||||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
22765304 |
cgagatgatgttgaaattgagccatttgatcatatgatagatg |
22765262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 279 - 421
Target Start/End: Complemental strand, 22775224 - 22775082
Alignment:
| Q |
279 |
tgaacagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccct |
378 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| | ||||| ||||||| |||| ||||| ||||| | || ||| |
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| T |
22775224 |
tgaacagatatggagtaatggaagatacaagagtgtagaacacagagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcct |
22775125 |
T |
|
| Q |
379 |
cgagatgacgttgaagttgagccctttgatcatatgatagatg |
421 |
Q |
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| T |
22775124 |
cgagatgatgttgaagtggagccctttgatcatatgatagatg |
22775082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 421
Target Start/End: Complemental strand, 22782723 - 22782585
Alignment:
| Q |
283 |
cagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgag |
382 |
Q |
| |
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|||||||||||||| ||||||| ||| |||||||||||||| | | |||||||| ||||||| ||||||| |||| ||||||||||||| || |||| || |
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| T |
22782723 |
cagatattgagtaacggaaaattcaaaagtgtagaacacagagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaag |
22782624 |
T |
|
| Q |
383 |
atgacgttgaagttgagccctttgatcatatgatagatg |
421 |
Q |
| |
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|||| |||||||||||||| ||| ||||||||||||||| |
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| T |
22782623 |
atgatgttgaagttgagccatttcatcatatgatagatg |
22782585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 417
Target Start/End: Original strand, 16085023 - 16085156
Alignment:
| Q |
283 |
cagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgag |
382 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||| | |||||| ||||||||| ||||| | |||||||||| |
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| T |
16085023 |
cagatatggagtaatggaaaatacaagagtgtagaacacagagcg-tcacaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgag |
16085121 |
T |
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| Q |
383 |
atgacgttgaagttgagccctttgatcatatgata |
417 |
Q |
| |
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| || |||||||||||||||||||| ||||||||| |
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| T |
16085122 |
aagatgttgaagttgagccctttgaccatatgata |
16085156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 423
Target Start/End: Original strand, 23278357 - 23278490
Alignment:
| Q |
290 |
tgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgt |
389 |
Q |
| |
|
||||||||||||||||||||||||| || || || | ||||||||| ||||||| ||||||| ||||| || ||||||||| ||||| || ||||| | |
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| T |
23278357 |
tgagtaatggaaaatacaagagtgtggagcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgc |
23278456 |
T |
|
| Q |
390 |
tgaagttgagccctttgatcatatgatagatgat |
423 |
Q |
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|||| ||| ||||||||||||||||||||||||| |
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| T |
23278457 |
tgaacttgggccctttgatcatatgatagatgat |
23278490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 22766193 - 22766121
Alignment:
| Q |
15 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
87 |
Q |
| |
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||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
22766193 |
caaaggaaattgggttccagttattccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
22766121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 22775709 - 22775637
Alignment:
| Q |
16 |
aaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaa |
88 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
22775709 |
aaaggaaattgggtacccgttactccaatatcagatgctctagttgtcaatgtcggagatgtaatagaggtaa |
22775637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 16084177 - 16084250
Alignment:
| Q |
15 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggtaa |
88 |
Q |
| |
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||||||||||||||||||||| | || ||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
16084177 |
caaaggaaattgggtaccggtaactcccatagcagatgctctagttgtcaatgttggagatgcaatagaggtaa |
16084250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 23278110 - 23278182
Alignment:
| Q |
15 |
caaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
87 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || ||||| |||| ||||| |||||||||| ||||||||| |
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| T |
23278110 |
caaaggaaattgggtaccaattaatccaataccaaatgctttagtggtcaatcttggagatgtaatagaggta |
23278182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 22770422 - 22770360
Alignment:
| Q |
282 |
acagatattgagtaatggaaaatacaagagtgtagaacacagggtaatgacaaatcagaacaa |
344 |
Q |
| |
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||||||| |||||||||| |||||||||||||| ||||| || | ||| |||||| ||||||| |
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|
| T |
22770422 |
acagatactgagtaatggcaaatacaagagtgtggaacatagagcaatcacaaataagaacaa |
22770360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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