View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_14 (Length: 365)
Name: NF6510_low_14
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 45175534 - 45175660
Alignment:
| Q |
156 |
tactatagtttcattaattaagccatgcgcatgcatatataaatatgtgtttggttcttgttatgaattgaattgattataattttgttctgaatttgtt |
255 |
Q |
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| T |
45175534 |
tactatagtttcattaattaagccatgc--atgcatatataaatatgtgtttggttcttgttatgaattgaattgattataattttgttctgaatttgtt |
45175631 |
T |
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| Q |
256 |
agtaaattaaatatgacaggataatgcagc |
285 |
Q |
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| T |
45175632 |
agt-aattaaatatgacaggataatgcagc |
45175660 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 45175431 - 45175469
Alignment:
| Q |
53 |
tatataattcctatgacagaattagagatatgtttaatg |
91 |
Q |
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| T |
45175431 |
tatataattcctatgacagaattagagatatgtttaatg |
45175469 |
T |
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