View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_15 (Length: 362)
Name: NF6510_low_15
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8544558 - 8544197
Alignment:
| Q |
1 |
tgctgaaagcctcttccttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttatttatgataatttgtttagactccattaatct |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
8544558 |
tgctgaaagcctctttcttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttatttatggtaatttgtttaaactccattaatct |
8544459 |
T |
|
| Q |
101 |
gaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagagcaggaggtagataatgaatg---------------aga |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8544458 |
gaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagagcaggaggtagataatgaatgagtgagcattagattaga |
8544359 |
T |
|
| Q |
186 |
ttagatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgattggaggataatgagtggggggttgtattagcaaaatgg |
285 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8544358 |
atagatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgattggcggataatgagtggggggttgtattagcaaaatgg |
8544259 |
T |
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| Q |
286 |
agcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttg |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8544258 |
agcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttg |
8544197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8609797 - 8609436
Alignment:
| Q |
1 |
tgctgaaagcctcttccttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttatttatgataatttgtttagactccattaatct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
8609797 |
tgctgaaagcctctttcttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttatttatggtaatttgtttaaactccattaatct |
8609698 |
T |
|
| Q |
101 |
gaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagagcaggaggtagataatgaatg---------------aga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8609697 |
gaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagagcaggaggtagataatgaatgagtgagcattagattaga |
8609598 |
T |
|
| Q |
186 |
ttagatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgattggaggataatgagtggggggttgtattagcaaaatgg |
285 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8609597 |
atagatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgattggcggataatgagtggggggttgtattagcaaaatgg |
8609498 |
T |
|
| Q |
286 |
agcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8609497 |
agcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttg |
8609436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 25014599 - 25014545
Alignment:
| Q |
289 |
agtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgca |
343 |
Q |
| |
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|||||||||||||||||| |||| ||||||||| |||||||||| || ||||||| |
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| T |
25014599 |
agtaagtgggaagccttttttctctcaccggagtggagtgccttgactatttgca |
25014545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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