View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_16 (Length: 360)
Name: NF6510_low_16
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16395093 - 16395192
Alignment:
| Q |
1 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgcattaatattacttttaatttggtcaattttatatttgttcata |
100 |
Q |
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| T |
16395093 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgcattaatattacttttaatttggtcaattttatatttgttcata |
16395192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 16395238 - 16395372
Alignment:
| Q |
122 |
gaggaagtgttacttaatcacaacaaatattataaggagaatgcattaaaaattaacaatgtagtccaaaaaattcgtcgatgtattaaaatgttttcaa |
221 |
Q |
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| T |
16395238 |
gaggaagtgttacttaatcacaacaaatattatatggagaatgcattaaaaattaaaaatgtagtccaaatttttttttggtgcatt-aaatgttttcaa |
16395336 |
T |
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| Q |
222 |
aaaatatgcttcaccaatattaataaacgcgtctaa |
257 |
Q |
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| T |
16395337 |
aaaatatgtttcacccaaattaataaacacgtctaa |
16395372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 16399057 - 16399115
Alignment:
| Q |
302 |
tttcaataaaatgacacattacccacttacccagtgaaatacgtctacatattagacat |
360 |
Q |
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| T |
16399057 |
tttcaataaaatgacatattaccaaattacccagtgaaatacgtctatatattagacat |
16399115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 30887409 - 30887310
Alignment:
| Q |
1 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgcattaatattacttttaatttggtcaattttatatttgttcata |
100 |
Q |
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| T |
30887409 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgcattaatattacttttaatttggtcaattttatatttgttcata |
30887310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 173 - 360
Target Start/End: Complemental strand, 30887231 - 30887051
Alignment:
| Q |
173 |
attaacaatgtagtccaaaaaattcgtcgatgtattaaaatgttttcaaaaaatatgcttcaccaatattaataaacgcgtctaaaattaatatcgatga |
272 |
Q |
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||||| |||| ||||||||| |||| ||| || |||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||| || | |
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| T |
30887231 |
attaaaaatgcagtccaaaatattcttcggtgcattaaaatgttttcaaaaaatatgtttcacccaaattaataaacgcatctaaaattaata-aaataa |
30887133 |
T |
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| Q |
273 |
ttcaacaaaataaatgtttcatatttcaatttcaataaaatgacacattacccacttacccagtgaaatacgtctacatattagacat |
360 |
Q |
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| T |
30887132 |
ttcaccaaaataaatgtttcat------atttcaataaaatgacacattaccaaattacccagtgaaatacgtctatatattagacat |
30887051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22850088 - 22849989
Alignment:
| Q |
1 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgcattaatattacttttaatttggtcaattttatatttgttcata |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22850088 |
caaattgaatcaaagaaaataacactgaaatctcacttttaagtacattgaatatgtattaatattacttttaatttggtcaattttatatttgttcata |
22849989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 360
Target Start/End: Complemental strand, 22849415 - 22849235
Alignment:
| Q |
173 |
attaacaatgtagtccaaaaaattcgtcgatgtattaaaatgttttcaaaaaatatgcttcaccaatattaataaacgcgtctaaaattaatatcgatga |
272 |
Q |
| |
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||||| |||| ||||||||| || | ||| || |||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||| |||| |
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| T |
22849415 |
attaaaaatgcagtccaaaatatccttcggtgcattaaaatgttttcaaaaaatatgtttcacccaaattaataaacgcatctaaaattaata-aaatga |
22849317 |
T |
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| Q |
273 |
ttcaacaaaataaatgtttcatatttcaatttcaataaaatgacacattacccacttacccagtgaaatacgtctacatattagacat |
360 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||| |
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| T |
22849316 |
ttcaccaaaataaatgtttcat------atttcaataaaatgacacattaccaaattacctagtgaaatacgtctatatattagacat |
22849235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 13237025 - 13237073
Alignment:
| Q |
36 |
cttttaagtacattgaatatgcattaatattacttttaatttggtcaat |
84 |
Q |
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||||||| | |||||||||||||||||| ||| |||||||||||||||| |
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| T |
13237025 |
cttttaaatgcattgaatatgcattaatcttatttttaatttggtcaat |
13237073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 27345665 - 27345617
Alignment:
| Q |
36 |
cttttaagtacattgaatatgcattaatattacttttaatttggtcaat |
84 |
Q |
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||||||| | |||||||||||||||||| ||| |||||||||||||||| |
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| T |
27345665 |
cttttaaatgcattgaatatgcattaatcttatttttaatttggtcaat |
27345617 |
T |
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