View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_2 (Length: 840)
Name: NF6510_low_2
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 11 - 816
Target Start/End: Complemental strand, 6186757 - 6185952
Alignment:
| Q |
11 |
acatcatcaatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
110 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||| || |||||||||||| ||||| |
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| T |
6186757 |
acatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagactgatgccggag |
6186658 |
T |
|
| Q |
111 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
210 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186657 |
ttagagaattcaatggtagaaagacgagttttgatgatgtgatgaatgcaattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
6186558 |
T |
|
| Q |
211 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6186557 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatgaagcaatggtgagaaaactctctgcatgtgagact |
6186458 |
T |
|
| Q |
311 |
atgggatctgctactactatttgtaccgacaaaacaggtactattgaaaaatacttgattctttaaaagctgttttcaaaagtgattatttattttgtaa |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186457 |
atgggatctgctactactatttgcaccgacaaaacaggtactattgaaaaaaacttgattctttaaaagctgttttcaaaagtgattatttattttgtaa |
6186358 |
T |
|
| Q |
411 |
caagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaagg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186357 |
caagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaaga |
6186258 |
T |
|
| Q |
511 |
aggtgcatattccaatgttgatccatctgttcttcaattgatcaaagaaggagttgctctcaatacaactggtgatgttcacaaatcgaaaacaggttcg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6186257 |
aggtgcatattccaatgttgatccatctgttcttcaattgatcaaagaaggagttgctctcaatacaactggtgatgctcacaaatcgaaaacaggttcg |
6186158 |
T |
|
| Q |
611 |
gattctgaatttgagttttcaggaagtccaacagaaaaagcaatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagtt |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186157 |
gattctgaatttgagttttcaggaagtccaacagaaaaagcaatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagtt |
6186058 |
T |
|
| Q |
711 |
gttctattattcaagttgagactttcaactcaaagaagaaaagaagtggagttttgttgagaaggaatgttgacaacaaagcttttgcacattggaaagg |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186057 |
gttctattattcaagttgagactttcaactcaaagaagaaaagaagtggagttttgttgagaaggaatgttgacaacaaagcttttgcacattggaaagg |
6185958 |
T |
|
| Q |
811 |
agcagc |
816 |
Q |
| |
|
|||||| |
|
|
| T |
6185957 |
agcagc |
6185952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 449 - 819
Target Start/End: Complemental strand, 4237226 - 4236856
Alignment:
| Q |
449 |
acacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaaggaggtgcatattccaatgttgatccatctgttcttcaat |
548 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||| ||||||||||||| ||||||||||| |
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|
| T |
4237226 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttgatccatttgttcttcaat |
4237127 |
T |
|
| Q |
549 |
tgatcaaagaaggagttgctctcaatacaactggtgatgttcacaaatcgaaaacaggttcggattctgaatttgagttttcaggaagtccaacagaaaa |
648 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| || |||||||||||||| |
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|
| T |
4237126 |
tgatcaaagaaggagtttctctcaatacaactggtggtgttcacaaattgaaatcaggttctgattctgaatttgagttttctggtagtccaacagaaaa |
4237027 |
T |
|
| Q |
649 |
agcaatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaactcaaagaag |
748 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4237026 |
agcaatactatcttgggctgttttggaattgaaaatggatatggagaacttgacaaaaagttgttctattcttcaagttgagactttcaactcaaagaag |
4236927 |
T |
|
| Q |
749 |
aaaagaagtggagttttgttgagaaggaatgttgacaacaaagcttttgcacattggaaaggagcagcaga |
819 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || || || |||||||||||||||||||||| |
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|
| T |
4236926 |
aaaagaagtggagtattgttgagaaggaatgttgacaaccaaactatttcacattggaaaggagcagcaga |
4236856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 4243701 - 4243357
Alignment:
| Q |
11 |
acatcatcaatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
110 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| ||||||||| | |||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4243701 |
acatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggag |
4243602 |
T |
|
| Q |
111 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || |
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|
| T |
4243601 |
ttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttattggaattattgctgatgctgttactattgtcgttgttgctatccc |
4243502 |
T |
|
| Q |
211 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
4243501 |
cgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaact |
4243402 |
T |
|
| Q |
311 |
atgggatctgctactactatttgtaccgacaaaacaggtactatt |
355 |
Q |
| |
|
|||||||| |||||||||||||| || || || |||||||||||| |
|
|
| T |
4243401 |
atgggatcagctactactatttgcactgataagacaggtactatt |
4243357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 685 - 819
Target Start/End: Complemental strand, 21847841 - 21847707
Alignment:
| Q |
685 |
ggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaactcaaagaagaaaagaagtggagttttgttgagaaggaatgttgac |
784 |
Q |
| |
|
||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21847841 |
ggatatggagcacctaacaaaaggttattctattattcaagttgagactttcaactcaaagaagaaaagaagtggagttttgttgagaaggaatgtcgac |
21847742 |
T |
|
| Q |
785 |
aacaaagcttttgcacattggaaaggagcagcaga |
819 |
Q |
| |
|
| |||| || || |||||||||||||| |||||| |
|
|
| T |
21847741 |
agcaaaactactgtacattggaaaggagaagcaga |
21847707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 38358195 - 38358065
Alignment:
| Q |
188 |
actattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtga |
287 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||| ||||||||| | || ||||| || || ||||| | ||||||||| ||||| || ||||||| |
|
|
| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
|
| Q |
288 |
gaaaactctctgcatgtgagactatgggatc |
318 |
Q |
| |
|
| ||||| || || ||||| ||||||||||| |
|
|
| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatc |
38358065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
181 |
tgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattga |
239 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||| || |||||||||||||||| |
|
|
| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 39951730 - 39951669
Alignment:
| Q |
207 |
ttcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatg |
268 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||| |
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|
| T |
39951730 |
ttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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