View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_22 (Length: 318)
Name: NF6510_low_22
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_22 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5836 - 5540
Alignment:
| Q |
1 |
atagattctttttagcataannnnnnncaactgatgaatgaacatggtacatacatgcatattgaacaaatgatataaaccaaatacctccactttaaac |
100 |
Q |
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| T |
5836 |
atagattctttttagcataatttttt-caactgatgaatgaacatggtacatacatgcat---gaacaaatgatatacaccaaatacctccactttaaac |
5741 |
T |
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| Q |
101 |
aataaggatgtttgttagttgtgaacttgttatatccatcactttcatcatagtaggaataagcaaacctaatcaaaaactcaaatggagtattcacaaa |
200 |
Q |
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| T |
5740 |
aataaggatgtttgttagttgtgaacttgttatatccatcactttcatcatagctggaataagcaaacctaatcaaaaactcaaatggagtattcacaaa |
5641 |
T |
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| Q |
201 |
atttaagggattgaatgaaaacgtaaacttattactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatc |
300 |
Q |
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| T |
5640 |
atttaagggattgaatgaaaatgtaaacttgttactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatc |
5541 |
T |
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Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 108 - 301
Target Start/End: Original strand, 15929826 - 15930019
Alignment:
| Q |
108 |
atgtttgttagttgtgaacttgttatatccatcactttcatcatagtaggaataagcaaacctaatcaaaaactcaaatggagtattcacaaaatttaag |
207 |
Q |
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| T |
15929826 |
atgtttgttagttgtgaacttgttatatccatcactttcatcatagctggaataagcaaacctaatcaaaaactcaaatcgagtattcacaaaatttaag |
15929925 |
T |
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| Q |
208 |
ggattgaatgaaaacgtaaacttattactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatca |
301 |
Q |
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| T |
15929926 |
ggattgaatgaaaatgtaaacttattactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttagaatca |
15930019 |
T |
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