View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_28 (Length: 294)
Name: NF6510_low_28
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 55179123 - 55178858
Alignment:
| Q |
10 |
aagaaaatctactatagcaaatttgtttccaactatgaatatgattatgctaagtggcattatagaggatcctagaccgagtcttatcagcacggtggtc |
109 |
Q |
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| T |
55179123 |
aagaaaatctactatagcaaatttgtttccaactatgaatatgattatgctaggtggcattatagaggatcctagaccgagtcttatcagcacggtggtc |
55179024 |
T |
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| Q |
110 |
cagtctgcatctggcacagaccactcggagaatgaggatgagaaatcgaaaagccaagaaggtaacagaaaatgggaggaagaaacatttaaagaagaga |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
55179023 |
cagtctgcatctggcacagaccactcagagaatgaggatgagaaatcgaaaagccaagaaggtaacagaaaatgggaggaagaaacatttaaaggagaaa |
55178924 |
T |
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| Q |
210 |
tgaaagtgtcatcaagattatcaacatcacagaagcttggttggccacttctccgcaggatgcata |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178923 |
tgaaagtgtcatcaagattatcaacatcacagaagcttggttggccacttctccgcaggatgcata |
55178858 |
T |
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