View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_3 (Length: 580)
Name: NF6510_low_3
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 14 - 565
Target Start/End: Complemental strand, 48449706 - 48449155
Alignment:
| Q |
14 |
agatagctgtcagaataagacctctgcataatggaacgtctacataggtctatgctggagcgtgagcggcgaagaccataacgttcttttgtaatgtcct |
113 |
Q |
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| T |
48449706 |
agatagctgtcagaataagacctctgcataatggaacgtctacataggtctatgctggagcgcgagcggcgaagaccataacgttcttttgtaatgtcct |
48449607 |
T |
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| Q |
114 |
tagttgaagacgttgttggagaggtaggtatgccaactgctgtgtaggccatagcttttgattgttgtgcaagtcagcaagatcctccactatattggat |
213 |
Q |
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| T |
48449606 |
tagttgaagacgttgttggagaggtaggtatgccaactgctgtgtaggccatagcttttgattgttgtgcaagtcagcaagatactccactatattggat |
48449507 |
T |
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| Q |
214 |
ttctgtgaatcaaaaacttcatatcagaccacaaagcttcaaacatgttaagttttgttgttttggtgcctgaaacaagcctaacatatgaatatggatt |
313 |
Q |
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| T |
48449506 |
ttctgtgaatcaaaaacttcatatcagaccacaaagcttcaaacatgttaagttttgttgttttggtgcctgaaacaagcctaacatatgaatatggatt |
48449407 |
T |
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| Q |
314 |
ttataagaaaactgttacaagaactatgtatctagtttcttgttattaacgatagctttcttaaagatgtcaaaaacatgtcatagttaaaccaatttac |
413 |
Q |
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| T |
48449406 |
ttataagaaaactgttacaagaactatgtatctagtttcttgttattaacgatagctttcttaaagatgtcaaaaacatgtcatagttaaactaatttac |
48449307 |
T |
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| Q |
414 |
ccatcaatgaacgcaactcctatactatataaaacaaaaacatctttgttttgtgtgtgtacctccaaaggttaagacgttaacttggacattgagttct |
513 |
Q |
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| T |
48449306 |
ccatcaatgaacgcaactcctatactatataaaacaaaaacatctttgttttgtgtgtgtgcctccaaaggttaagacgttaacttggacattgagttct |
48449207 |
T |
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| Q |
514 |
tagttaggnnnnnnntgcaaagcttgttgaattctataagaggtaaatagtg |
565 |
Q |
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| T |
48449206 |
tagttaggaaaaaaatgcaaagcttgttgaattctataagaggtaaatagtg |
48449155 |
T |
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